Gene Vapar_5725 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5725 
Symbol 
ID7975778 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp437621 
End bp438325 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content69% 
IMG OID644796306 
ProductB3/4 domain protein 
Protein accessionYP_002947580 
Protein GI239820395 
COG category[S] Function unknown 
COG ID[COG3382] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCACTCTT TCTTCTTCTC TCATTCGCCG GAAATCTGGC AGCGCCATCC CGAACTGGTG 
CCCGGCGTCC TGCTGGCCCA GGGCATCCAC CGGAACGCCT GCGTGCAGGC GCAGGTGGCG
CACTACCACG GCGTGGCGCG CGCACGGCTC GAAACCGTCG GCTCGGAAGC CGATCTTCCG
GAGATCCAGG CCTGGCGCCG CACCTTCGCA CGCATGGGGC TCAAGCCCAC GCAGTACCGG
TGCGCCTCCG AGTCGCTGCT GCGCCGGTTC AGGAAGGAAG GCGCGCTGCC GCCGATCCAT
CCGCTCGTCG ATTTGTGCAA CGCGCTGTCG CTGGCCTTCG CGATTCCGAT CGCGGTGTTC
GACCTGTCGA AGGTGGCCGA GGGGCTGCAA GTGCGGTGCG CCGACGGCAG CGAAAGCTAC
CTCGCGTTCT CGGGCGAAAC GGAAACGCCC GAACGCGGCG AAGTCGTCTT TGCGGATGCC
GCAGGCTGCG CGCATGCGCG GCGCTGGACC CATCGCCAGA GCGCGCTTTC GGCCGTGCGC
GATGAAACCT CCCGCGTCCT CATCGTGGCC GAGGCCCTGC ATGCGGATGC CGCCAACGAT
GTCCGGCAGC TGCTGGATGC ACTGTCCCGG GCATTGGCCG AGACCTGGGC GCCGCCGGCC
GCGAGCGCGC TGTTGCGGCA AGACGCGCCC CGCCTGGTGT TCTGA
 
Protein sequence
MHSFFFSHSP EIWQRHPELV PGVLLAQGIH RNACVQAQVA HYHGVARARL ETVGSEADLP 
EIQAWRRTFA RMGLKPTQYR CASESLLRRF RKEGALPPIH PLVDLCNALS LAFAIPIAVF
DLSKVAEGLQ VRCADGSESY LAFSGETETP ERGEVVFADA AGCAHARRWT HRQSALSAVR
DETSRVLIVA EALHADAAND VRQLLDALSR ALAETWAPPA ASALLRQDAP RLVF