| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5723 |
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| Symbol | |
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| ID | 7975776 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 435682 |
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| End bp | 436689 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644796304 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_002947578 |
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| Protein GI | 239820393 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGAAAGC TTCATCGCTC GCTGGCAGCC GCCGGCCTGG CCCTCGCATT GGCCGTTCCG
GCGCTTGCGC AGGAGGCGCA GGAACGCGTC ATCCGCTTCG GCCACCTCAA CAACGCCGAC
CACCCGGTGA GCTTTGGCGT GAAGCGTTTT GCCGAGCTGC TGGCGGCCAA GAGCGGCGGC
AAGATGAAGG TGCAGGAATA CCCGGCCTCG CAGCTGGGCA ACGAGATGCA GCAGCAGTCG
GCGCTGCAGG GCGGCGTGCA GCAGATGTCG GCGCCGGCCA CCACTTCGCT CGCGGGCATC
GTGAAGGAGT TCGGCCTCGT CGACTTTCCG TTCGCGGTCG GCAACTTCGC GCAGGCCGAT
GCGCTGCTCG ACGGCCCGCT CGGGCAGGCG CTGGTTGCGA AGCTGCCGGA GAAGGGCCTG
GTCGCGCTGG GCTACTGGGA CCTGGGCTTT CGCAACGTCA CCAACAGCAA ACGCCCGATC
ACCCGGCCCG AAGACCTGGA GGGCCTGAAG ATCCGCGTCA TTCCCAACCC GGTGTTCCTG
GAGACCTTCA AGTCCTTCAA GGCCAACCCG GTGCCGATGC CCTTCGCGGA GCTCTACGGC
GCGCTCGAGT CGAAGGCGGT CGACGGCCAG GAGAACCCGT ACTCGGTGAT TCTTTCGAAC
AAGTTCTTCG AGGTGCAGAA GTTCGTGAGC GCCACCAACC ACGTGTACGC GGCCAACATC
GTCCTGGTCA GCAAGAAGTT CTGGGACACG CTCAATCCCG CCGAGCAGAA GATGATGCGC
GAGGCCGCAG ACGAGGCCCG GGGCTACCAG CGCCAGGTGA GCCGCGCCGC CGCGCAGCGC
GCCGTGGGCG AGCTCCAGGC CAAGGGCGCG AAGTTCAACG AGGTGGCGCC GGCCGAGCAG
GCCCGCATGC GGCAGATTGC GAGGCCCGTC ATCGAGCGCT TCGCCGCGAG CTACGACCCC
GCCGTCGTCA AGCTCTACAA CGACGAACTT GCGCGCATCC GCAAATAG
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| Protein sequence | MRKLHRSLAA AGLALALAVP ALAQEAQERV IRFGHLNNAD HPVSFGVKRF AELLAAKSGG
KMKVQEYPAS QLGNEMQQQS ALQGGVQQMS APATTSLAGI VKEFGLVDFP FAVGNFAQAD
ALLDGPLGQA LVAKLPEKGL VALGYWDLGF RNVTNSKRPI TRPEDLEGLK IRVIPNPVFL
ETFKSFKANP VPMPFAELYG ALESKAVDGQ ENPYSVILSN KFFEVQKFVS ATNHVYAANI
VLVSKKFWDT LNPAEQKMMR EAADEARGYQ RQVSRAAAQR AVGELQAKGA KFNEVAPAEQ
ARMRQIARPV IERFAASYDP AVVKLYNDEL ARIRK
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