Gene Vapar_5712 details

Gene Information

• Locus tag: Vapar_5712
• ID: 7975765
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: +
• Start bp: 427284
• End bp: 427979
• Gene Length: 696 bp
• Protein Length: 231 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644796293
• Product: transcriptional regulator, GntR family
• Protein accession: YP_002947567
• Protein GI: 239820382
• COG category: [K] Transcription
• COG ID: [COG1802] Transcriptional regulators

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.222073
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAGCCC TCCCCCGGAT CCGACTCGAC CGCACACGCC TTGCAGCACC CCAGGTGCTC 
GAAAAGCTGC GCGGTGCCAT CCTTTCCCTC GAACTCGTGC CCGGCACCGT GCTGGTCCGC 
CAGGAGCTGG CCGACCGCTT CGGCGTGAGC CAGACGCCGG TGCGCGAGGC CCTGCTGCGC 
CTGGCCGAGG AAGGCCTGGT GGATGTGTTC CCGCAGCACG CCACCTTGGT GAGCCGCATC 
GACGTCGACG CCGCGAAGCA GGCGCACTTT TTGCGCCGCT CGATCGAGCT CGAGATCGTG 
CACCAGCTGG CCGAAGAGGC GCCGCCCGAA CTCGTGGCCC AGCTGCAGGC CCAGGTCGCG 
CTGCAGGCCA CGCTGGCGGC GGCGCGGCAG TACGGCGACT TCGTCGGCGC CGACCGCAAG 
TTCCATCACC TCATGTATGA AGCCGCGGGC GTGCCGAGCC TGTGGGACAT GGTGTCCCGC 
GTCTCGGGCC ACGTGGACCG CCTGCGCCGC CTGCACCTGC CCACGGCCGG CAAGACCGAG 
GCGATCCTGC GCGACCACCG CGCCATCGTG CGCGCCATTG CAAAGCACGA CGGCGCGGCG 
GCGCAGAAGG CGCTGCGCGA GCATCTCTCC GGCACGCTGA GCTCGCTGCC GGAGATCTGC 
GCGCGGCATC CGGATTTCAT TGCGGGGAGG AGCTGA 

 

Protein sequence

MTALPRIRLD RTRLAAPQVL EKLRGAILSL ELVPGTVLVR QELADRFGVS QTPVREALLR 
LAEEGLVDVF PQHATLVSRI DVDAAKQAHF LRRSIELEIV HQLAEEAPPE LVAQLQAQVA 
LQATLAAARQ YGDFVGADRK FHHLMYEAAG VPSLWDMVSR VSGHVDRLRR LHLPTAGKTE 
AILRDHRAIV RAIAKHDGAA AQKALREHLS GTLSSLPEIC ARHPDFIAGR S