Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5667 |
Symbol | |
ID | 7975720 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 373425 |
End bp | 375293 |
Gene Length | 1869 bp |
Protein Length | 622 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644796250 |
Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
Protein accession | YP_002947524 |
Protein GI | 239820339 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGGGC CGGCCCTCGG CCTGGCGGCC GGCGCGCGGG TGGATGCGCC CCGGCTGTCG GCCATCGAGC GCCGGCTCGG CATGCTGGTC GACATGGCGG CCGGCGGCCT GGTGCTGGCC GACGTGGCGG TGCTGCTGGC GGGCGTGCTC GCGCGCTTCG TGTTCCACAG CCCGCTGGTC TGGTCCGACG AGCTCGCGTC GATCCTGTTC ATCTGGCTCG CGATGCTGGG CGCGGTGGTC GCGCTGCGGC GCGGCGAGCA CATGCGCATG ACGGCGCTGG TTTCGATGCA GCCGCCATCG CGGCGCCCGC TGTTCGAGGC CCTGGCGCTG TGTGCCTCGC TCGCGTTCCT GGCGATGGTG GCATGGCCGG CCTGGGAGTA CGCGTCGGAG GAGCGCTTCA TCACCACGCC CGCGCTCGAC ATCTCGAATG CGTGGCGGGC TGCGGCGCTG CCGGTGGGTG TGGGCCTGAT GGGCCTGTTC GCGGTGCTCA GGCTGCTGCG CGATGTGGAG TGGCGCATTA CGGCCAAGGC GGTGGCGATC GTGGCCACGC TGGTGGTGGC GTTCACGCTG GGCCGCTCGG TGTTCCAGGA GCTCGGTCGG CTGAACCTGC TGGTGTTCTT CGTCGGCGTG GTGCTGGCGG GCGTGCTCGC GGGCATTCCC ATCGCCTTTT CGTTCGGCCT TGGCACCTTC GGCTACCTGG CGCTGGCCAC CGACACGGCG CTGCCGGTGA TCGTGGGTCG CATGGACGAG GGCATGTCGC ACCTGATCCT GCTGGCGGTT CCGCTGTTCG TGTTCCTCGG CCTGCTGATC GAGATGACCG GCATGGCCAA GGCCATGGTC GCGTTTCTCG CGGGCCTGCT GGGGCATGTG AAAGGCGGGC TGTCGTACGT GCTGGTGGGC GCGATGTACC TCGTGTCGGG CATCTCGGGC TCCAAGGCGG CCGACATGGC GGCGGTGGCG CCGGCGCTTT TTCCCGAGAT GAAGCAGCGC GGCGCGAGCG AGGGCGAGCT CGTCGCGCTG CTGGCCGCGA CCGGCGCGCA GACCGAGACG GTGCCGCCCA GCCTGGTGCT GATCACCATC GGCTCGGTCA CGGGCGTGTC GATTGCCGCG CTGTTCACGG GCGGCCTGCT GCCGGCCGTG GTGCTGGGCC TGATGCTGTG CGTGGTCGTG TACTTCCGCT GCCGCGGCGA GGACCTGCGC GAGGTCGTGC GCACGCCGTG GCGCGAGGTC GGCCGGCTGG CCGTCGTGGC GCTGCCGGCG CTGGCGCTGC CGTTCGTGAT CCGCGCGGCG GTGGTCGAAG GCGTGGCCAC CGCCACCGAG GTGTCGACCA TCGGCATCAT GTACGCCGTG GTCGCGGGGC TCGTCGTGTA CCGGCAGTTC GACTGGAAGC GTCTCGGGCC GATGCTCGTT GCGACGGCGT CGCTGTCGGG CGCCATCCTG CTGATCATCG GCACCGCGAC CGCCATGGCC TGGGGCCTCA CGCAGTCGGG CTTCTCGCGC CTGCTGGCCG AAGCGATGAC CGGCCTGCCC GGCGGCGCGC CGATGTTCCT GGCGGTGTCG CTGGTGATCT TCGTGGTGCT GGGCAGCGTG CTCGAGGGCA TCCCGGCCAT CGTGCTGTTC GGGCCGCTGC TGTTTCCGAT AGCGCGCCAG TTGGGCATCC ACGAGGTGCA CTACGCGATG GTGGTGGTGC TGTCGATGGG CCTCGGCCTG TTCGCGCCGC CGCTGGGCGT GGGCTACTAC GCGGCCTGCG CGATCGGCCG CGTGCATCCT GACGCGGGCA TTCGCCCGAT TGCAGGCTAC ATGGTGGCGC TGCTGGTGGG GACGATTGCG GTGGCGGCGA TTCCTTGGCT GTCCATCGGG TTTCTTTGA
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Protein sequence | MSGPALGLAA GARVDAPRLS AIERRLGMLV DMAAGGLVLA DVAVLLAGVL ARFVFHSPLV WSDELASILF IWLAMLGAVV ALRRGEHMRM TALVSMQPPS RRPLFEALAL CASLAFLAMV AWPAWEYASE ERFITTPALD ISNAWRAAAL PVGVGLMGLF AVLRLLRDVE WRITAKAVAI VATLVVAFTL GRSVFQELGR LNLLVFFVGV VLAGVLAGIP IAFSFGLGTF GYLALATDTA LPVIVGRMDE GMSHLILLAV PLFVFLGLLI EMTGMAKAMV AFLAGLLGHV KGGLSYVLVG AMYLVSGISG SKAADMAAVA PALFPEMKQR GASEGELVAL LAATGAQTET VPPSLVLITI GSVTGVSIAA LFTGGLLPAV VLGLMLCVVV YFRCRGEDLR EVVRTPWREV GRLAVVALPA LALPFVIRAA VVEGVATATE VSTIGIMYAV VAGLVVYRQF DWKRLGPMLV ATASLSGAIL LIIGTATAMA WGLTQSGFSR LLAEAMTGLP GGAPMFLAVS LVIFVVLGSV LEGIPAIVLF GPLLFPIARQ LGIHEVHYAM VVVLSMGLGL FAPPLGVGYY AACAIGRVHP DAGIRPIAGY MVALLVGTIA VAAIPWLSIG FL
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