Gene Vapar_5641 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5641 
Symbol 
ID7975253 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand+ 
Start bp348827 
End bp349267 
Gene Length441 bp 
Protein Length146 aa 
Translation table11 
GC content64% 
IMG OID644796225 
ProductNUDIX hydrolase 
Protein accessionYP_002947499 
Protein GI239820314 
COG category[L] Replication, recombination and repair
[R] General function prediction only 
COG ID[COG0494] NTP pyrophosphohydrolases including oxidative damage repair enzymes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCAACCA CCTCCTATGG CGTGCTCATC GTCAACGAGC AAAACCAGCT TCTCATGGCG 
CACGCGACGG GCCAGAAGCA CTGGGACATC CCCAAGGGCG GCGCAGAAGC AGGCGAGTCC 
GCGCGCGAAG CGGCCATCCG CGAGGTTCGG GAAGAGACGG GCATCGAGCT GTCCGCGGAT 
TCGCTGGAAG AGCTCGGGCG CATGCCTTAC CGCCCGGCCA AGGACCTGCA CCTGTTCCGT 
GCCTTCGTGC ACACGCGCGA CTGCGATATT TCGGCGTGCA AGTGCACGAG CTTCTTTCCT 
CATCACGCTT CAGGCGTGAT GACGCCCGAG GTGGACCAGT TCAAGTGGGT GGACCCCGCA 
GACATACCGG TGCTTGCCGC CAAGTCGATG ACGGCGGTGC TTCGGACGCT GCCCGGCTTC 
GGAACGACGA GGGACACCTG A
 
Protein sequence
MPTTSYGVLI VNEQNQLLMA HATGQKHWDI PKGGAEAGES AREAAIREVR EETGIELSAD 
SLEELGRMPY RPAKDLHLFR AFVHTRDCDI SACKCTSFFP HHASGVMTPE VDQFKWVDPA 
DIPVLAAKSM TAVLRTLPGF GTTRDT