| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5604 |
|---|
| Symbol | |
|---|
| ID | 7975216 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 309446 |
|---|
| End bp | 310342 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644796188 |
|---|
| Product | dihydrodipicolinate synthase |
|---|
| Protein accession | YP_002947462 |
|---|
| Protein GI | 239820277 |
|---|
| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
|---|
| TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCGT TTCGAGGCAC CTATACGGTG CTGATCACCC CCATGACCGC CGACGGAAAG
CACGTGGACG TGCCTGCGCT CAAGAAGCTG GTCGACTGGC AGATCGAAGA GGGCATCCAC
GGGCTGATTC CGCTGGGCAG CACCGGGGAG TTCCTCTCGT TGACGCCCGA GGAGCGGCAG
CTGGTGATCG AGACCTGTGT GCAGACGACC GCAAAACGCG TGCCTGTTCT GATCGGCACC
GGCGCGGAGT GGACCGACGA GTGCGTGCGG CTGAGCCGCG AAGCCGAGGG CATGGGCGCC
GACGGCGTGA TGATCATTCC GCCGTTCTAC AGCTCGCCCA CCGACGACGA ACTGTTCGAG
CACTACCGCA AGGTGGGCGA GGCGATCAAC GTGCCGATCA TGGTCTACAA CAACCCGGCC
ACGGCCAATG TGGACCTCAA GCCCGAGCTG GTGGCGCGCC TCTCGCGCAT CGACAACTGC
AGGTACATCA AGGAGTCGAC GCTCGAGGTC ACGCGGGTGC GCGACATCAT CGAACTGTGC
GGCGACCGCA TGACGGTGTT CGCGGGCATC CTCGGCTACG AGTCGTTCTG GCTCGGCGCC
CAGGGCTGGG TGGCGGTGTG CTCCAACCTG ATTCCGAAGA TGTCGGCCCG CCTGTTCGAG
CTGGTGGCCG ACGAGCACGA CATGCCCGCC GCGCTGGCGC TCTACAAGCA GATGCTGCCG
ATCGTGCGCT GGGTCGGCGG CCACCGCTAC GTGGCTGCGT CGAAGGACGG CCTCTCGATG
ATGGGCCTGC CCGTGGGCAA GCCGCGCGCG CCGCGCCTGC CCCTGCCTGA GGCCGATGCC
GCCGACCTGC GGCGCGCGCT CGATCGGCTC GGCCTGCTGG ACTCCATCGC GCCTTGA
|
|---|
| Protein sequence | MTAFRGTYTV LITPMTADGK HVDVPALKKL VDWQIEEGIH GLIPLGSTGE FLSLTPEERQ
LVIETCVQTT AKRVPVLIGT GAEWTDECVR LSREAEGMGA DGVMIIPPFY SSPTDDELFE
HYRKVGEAIN VPIMVYNNPA TANVDLKPEL VARLSRIDNC RYIKESTLEV TRVRDIIELC
GDRMTVFAGI LGYESFWLGA QGWVAVCSNL IPKMSARLFE LVADEHDMPA ALALYKQMLP
IVRWVGGHRY VAASKDGLSM MGLPVGKPRA PRLPLPEADA ADLRRALDRL GLLDSIAP
|
|---|
| |