| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5602 |
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| Symbol | |
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| ID | 7975214 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 307792 |
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| End bp | 308517 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644796186 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_002947460 |
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| Protein GI | 239820275 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGACAAG GCTGGAACTG GTCGGGCTTC TTCGGCTATC TGTTCAACCC CTACATCCTG
AGCGGTGCGT TCACCACCCT GTGGCTGACG CTGGCGGCCA TTGCAGGCGG ATTGGTCGTG
GGATGTGCCC TGGCCCTGGC CAGGCTGTCG CGCCATGACT GGCTCGCCGC GCCGGCGCAC
TTCTACATCT GGGTGTTCCG CGGCACGCCG CTGCTGGTCC AGCTGATCAT CATCTACACC
GGGCTGCCGC AGCTGGGCCT CAAGCTGTCG GTGGTCGAGT CGGCGCTGCT CGGCCTGATC
CTCAACGAGG CGGCCTACCT CGCCGAAGTG GTGCGCGGCG GCATCCAGTC GGTGCCGGCC
GGCCAGACGA ACGCGGCGCG CGCCGTCGGC TTCAGCAGCG CACAGAGCAT GCGCTACATC
GTGATGCCGC AGGCGATGCG GCTGATCATC CCGACGCTGG GCAACAGCAT CAACGGCCTG
CTCAAGACCA CGTCCATCAC TTCGGTGATC TCGATGGAAG AGCTGCTGCG CCGCACCCAG
GTGCTGATCC AGGAGAAGTT CATGGTGCTG GAGCTGTTCA TCGTGGCCGC GATCTACTAC
CTGCTCATGA CGACGGTGTG GGACGTCATC CAGCGCCGCA TCGAGCGCCA CTATGGCCGC
GCCTACGGCA ATGCGAGCGA GCCCGTGGCG GCAGCCACGG CCGACGTCGT GCTCGAGCAA
CGCTAG
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| Protein sequence | MGQGWNWSGF FGYLFNPYIL SGAFTTLWLT LAAIAGGLVV GCALALARLS RHDWLAAPAH
FYIWVFRGTP LLVQLIIIYT GLPQLGLKLS VVESALLGLI LNEAAYLAEV VRGGIQSVPA
GQTNAARAVG FSSAQSMRYI VMPQAMRLII PTLGNSINGL LKTTSITSVI SMEELLRRTQ
VLIQEKFMVL ELFIVAAIYY LLMTTVWDVI QRRIERHYGR AYGNASEPVA AATADVVLEQ
R
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