Gene Vapar_5600 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5600 
Symbol 
ID7975212 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand- 
Start bp305563 
End bp306249 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content67% 
IMG OID644796184 
Producttranscriptional regulator, GntR family 
Protein accessionYP_002947458 
Protein GI239820273 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCAGTC TTCCCAGTCC GGCCCAACCC GCCACCATCA CCATCGCACC GCTCGAGGTG 
CGCTCTGCCA GCCTGGCCGA ACAGGCCTAT GCGCGCCTGC GCACCTTGAT CCTGGATCGC 
CAGATCTCGG CCGGCAGTCC CCTGCAGGAA GGCCGCCTGG CGGAAGAACT CCGGATCTCG 
CGCACGCCGA TGCGCGAGGC GCTGGTGCGC CTCGCCGGCG AAGGGCTTCT GGTGCGCCGC 
GATGCGCGTT CCTATGCGGT GCGCGCGCTG GGCACCAAGG AATACTTCGA CTGCATGCGA 
GCCCGCGAGA TCATCGAGGG CGAAGCCATC GTGCTCGCCA TCGACAAGAT CAGCGACGCG 
CAGATCGATG CGCTCGAGGC CGACCTGAAG TCGCTGGACG CCGGTGAGCA TGACGAGACC 
GAGCACTGGC ATTTCGATGA CCGGTTCCAC TTGCTCATTG CGGCGGCCAG CGGCAACGTC 
GTGCTGCCGA GGCTGGTCGA GGAGCTGCGC GTGAACGCGC GTCTGTTCCG GCTGCACAGC 
CCGCTGCATC GCCAGCGCGA AAACCACGAC GAGCACGGCG AGATCATCCA TGCGCTGCGT 
GCGCGCGATC CGGCGCTGGC ACGCAACGCC ATGTGCGCGC ATTTGCGCAG CCTTCAGGAG 
GACGTCAAGC GCGCGATCGT CGGTTGA
 
Protein sequence
MPSLPSPAQP ATITIAPLEV RSASLAEQAY ARLRTLILDR QISAGSPLQE GRLAEELRIS 
RTPMREALVR LAGEGLLVRR DARSYAVRAL GTKEYFDCMR AREIIEGEAI VLAIDKISDA 
QIDALEADLK SLDAGEHDET EHWHFDDRFH LLIAAASGNV VLPRLVEELR VNARLFRLHS 
PLHRQRENHD EHGEIIHALR ARDPALARNA MCAHLRSLQE DVKRAIVG