| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5584 |
|---|
| Symbol | |
|---|
| ID | 7975196 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 291164 |
|---|
| End bp | 292177 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644796168 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002947442 |
|---|
| Protein GI | 239820257 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3181] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0384253 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTCAT TCCCGCTTCG TGCCGGCGCT TCGCGTCGTC GTCTCGCCAT CGCCGCCGCA
GCACTGGTGG CCGGCGCCAC CCTCCTCGCA CCTGCCGGCG CTCTTGCGCA GGCCCCGTAT
CCGTCGCGGC CGATCCGGCT GATCGTGCCG TTCCCGGCCG GCGGCGGCAC CGACCTGATT
GCGCGTGAAG TTGCCAACAA GGTCGCCACC AGCAACGGCT GGTCGATCGT CATCGACAAC
AAGCCCGGCT CGGGCGGCAA CCTCGGGGTC GATGCGGCCG CCAAGGCAGC GCCCGACGGC
TACACGCTGG TGCTCGGCCA GACCAGCAAC CTGGCGATCA ATCCCACGCT CTACGCCAGG
CTGCCCTACA ACCCCGAGAA GGATCTGACG CCGATCGGCC TCGTGGCCAG CGCGCCGCTG
GTGCTGGTGG TGGCGGCCGA CTCGCCGTAC AAGACATTGG CCGACGTGGT GGCCGCGGCC
AAGGCCAGGC CCGATGCGCT CAACTACGCG AGCTCGGGCA GCGGCACGGT GGCGCACCTG
GCGACCGAGC TCTTCCAGAA GACCGCCGAC GTCAGGTTCA CGCACGTGCC CTACAAGGGC
GCCGCGCAGG GATCGACCGA CCTGATCGGC GGCCAGGTCC AGATGTACAT GTCCTCGGTG
CCGACGCTGA TCGGGCACAT CAAGAGCGGC AAGATGCGCC CGATCGTCGT CACCTCGCGC
AAGCGCACCG CCGACCTTCC CGGTGCGCCA ACGGTGGACG AGTCGGGCTA CAAGGGCTTC
GAGGCCGCGA CATGGTTCGG CGTTGCGGGT CCGGCCGGCC TGCCGAAGGA CGTGGTGGCC
AAGCTCAACG CGGCGTTCAA CAAGGCGCTG CAGGACCCCG AGGTCAAGCG CAAGCTCGCA
AGCCAGGGCG CCGAGGTGAA GGGCAGCACG CCGGAGGAGT TCGGCGCCTA CATCCGCGAA
GAAATGGTGC GCTGGGGCAA GGTCGTCAAG GACTCGGGCG CCAAGGTCGA TTGA
|
|---|
| Protein sequence | MPSFPLRAGA SRRRLAIAAA ALVAGATLLA PAGALAQAPY PSRPIRLIVP FPAGGGTDLI
AREVANKVAT SNGWSIVIDN KPGSGGNLGV DAAAKAAPDG YTLVLGQTSN LAINPTLYAR
LPYNPEKDLT PIGLVASAPL VLVVAADSPY KTLADVVAAA KARPDALNYA SSGSGTVAHL
ATELFQKTAD VRFTHVPYKG AAQGSTDLIG GQVQMYMSSV PTLIGHIKSG KMRPIVVTSR
KRTADLPGAP TVDESGYKGF EAATWFGVAG PAGLPKDVVA KLNAAFNKAL QDPEVKRKLA
SQGAEVKGST PEEFGAYIRE EMVRWGKVVK DSGAKVD
|
|---|
| |