| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5578 |
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| Symbol | |
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| ID | 7975190 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 285037 |
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| End bp | 285690 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644796162 |
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| Product | transport-associated |
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| Protein accession | YP_002947436 |
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| Protein GI | 239820251 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2823] Predicted periplasmic or secreted lipoprotein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00026661 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATCCG ACACACAGCT CAGGGCGGAC GTCCAAGCCG AACTCGAATG GGACCCCGCC
ATCACTTCGA CGGACGTGGG CGTCATCGTC AACCACGGCG TGGTCACGCT GACGGGCCAT
CTCGGCAGCT GCGCCGAGAA GCTCGCGGTG GAACAGGCCG CGCAGCGCGT CAGCGGCGTG
AAGGCGCTGG CCATCGAAAC CTCGGTGAAG CTGGCCGCCG GCTTCGAACG CACCGATGCC
GACATCGCAC AGGCTGCCGG GCACGCGCTC GAATGGAACG TGCAGGTGCC CCGCGACGCG
GTGCGGCCGA TGGTCGAGGA CGGATGGGTC ACGCTGACCG GCGAAGTCGA GTGGGACTAC
CAGCGCCAGG CCGCGGAATC GACGGTTCGC AACCTGCTGG GTGTCACCGG CATCACGAAC
CTGGTGAGGA TCAAGCTGCA GCGGTGTTCC GCCGACGTGG AACGGCAGGT GCAGGACGCG
CTCATCCGCG TGTTCCACGA CGCGCCGCGG CAGGTGGCGG TCGACGTGAA CGGCTCGCAG
GTCGTGCTGC GCGGCAAGGT GCGTTCCTGG GCGGAGCTGG ACGCGGTGCG CGGCGCCGCC
TGGTCCGCGC CGGGGGTGGT TTCGGTGGTC AACGAACTGG CCGTGGAAGC CTGA
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| Protein sequence | MKSDTQLRAD VQAELEWDPA ITSTDVGVIV NHGVVTLTGH LGSCAEKLAV EQAAQRVSGV
KALAIETSVK LAAGFERTDA DIAQAAGHAL EWNVQVPRDA VRPMVEDGWV TLTGEVEWDY
QRQAAESTVR NLLGVTGITN LVRIKLQRCS ADVERQVQDA LIRVFHDAPR QVAVDVNGSQ
VVLRGKVRSW AELDAVRGAA WSAPGVVSVV NELAVEA
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