| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5561 |
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| Symbol | |
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| ID | 7975418 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 271187 |
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| End bp | 272017 |
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| Gene Length | 831 bp |
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| Protein Length | 276 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644796145 |
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| Product | OmpA/MotB domain protein |
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| Protein accession | YP_002947419 |
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| Protein GI | 239820234 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAACGC ACATCCATCG CTTCTCGGCC ATTGCAGCGG GCGCCGCGGC GCTGCTGCTG
CTGCAGGGCT GCAGCTCCTA TGTGAGCCGC GGCATCACCG ACGACGGCAA GGCCACCGAA
GTGATCTTTC CCAACATCGA CAACGATGCA TGGCTCAAGG AAGGCACCTT CCCCAACCTG
GACAACCTGC GCGCCGTGGC GCCCGGCGTC ACCAAGGACC AGCTGTACGA CCTGCTCGGC
CGACCGCATT TCCGCGAAGG CATGGCGGGC CCGCGCGAGT GGGACTACAT CTTCCATTTC
CGCAAGCCCG GCGGCGGCGT GACCACCTGC CAGTACAAGG CGATCTTCGA CAAGGACTAC
AAGGCGCAGA CCTTCCACTG GCTGCCGGCC GGCTGCGCCG ATGTGCTGGC GGTGCGCGCA
TTGCCGGCGG CCGAACGGCC GGCCGCCGCG AGCCCGGCAC CGCGGCGCAC CACGCTGGGT
GCCGATGGCC TGTTCCGCTT CGACGGCCGG TCGCTCGCCG ACCTGCTGCC GGAGGGCCGC
CGCAAGCTCG ATGCGCTGGC CGGCGACATC AAGGCGGCGG ATGCCATCAA GGTGACGGGC
TACACCGACC GGCTCGGCAG CCAGGCCTAC AACAGCGCCC TCTCGCTGGC GCGCGCCAAC
ACCGTGCGCG ACTACCTGGT CCAGGCCGGT GTGCCGGCGC AGAAGATACA GGTGCAAGGC
AAGGGCGAAT CCGAGCCGAA GGTGCAGTGC ACGCAAACGG CGCGCGCGGC CCTGATCGAC
TGCCTGGCAC CCAACCGCCG CGTCGAGATC GAGGTCTTCG CGGAGCGCTG A
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| Protein sequence | MTTHIHRFSA IAAGAAALLL LQGCSSYVSR GITDDGKATE VIFPNIDNDA WLKEGTFPNL
DNLRAVAPGV TKDQLYDLLG RPHFREGMAG PREWDYIFHF RKPGGGVTTC QYKAIFDKDY
KAQTFHWLPA GCADVLAVRA LPAAERPAAA SPAPRRTTLG ADGLFRFDGR SLADLLPEGR
RKLDALAGDI KAADAIKVTG YTDRLGSQAY NSALSLARAN TVRDYLVQAG VPAQKIQVQG
KGESEPKVQC TQTARAALID CLAPNRRVEI EVFAER
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