| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5548 |
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| Symbol | |
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| ID | 7975405 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 251781 |
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| End bp | 253487 |
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| Gene Length | 1707 bp |
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| Protein Length | 568 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644796133 |
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| Product | thiamine pyrophosphate protein domain protein TPP-binding |
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| Protein accession | YP_002947407 |
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| Protein GI | 239820222 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGGCCC GATGGCTGGC GATGAATGAT TCCCCCAAAC TGCGCACCGG CGGCCAGCTG
ATCGTCGACG CGCTGCTCGC GCAAGGCGCT GACACCGTGT TCTGCGTGCC CGGCGAGAGC
TACCTCGACG TGCTCAACGC GCTGCATGCG CAGCAGGACG CCTTGCGTGT CGTGGTGTGC
CGCCACGAAG GCGCGGCCGC CTTCATGGCC GAGGCCCAGG GCAAGCTCAC GGGCCGGCCC
GGCATCTGCA TGGTCACGCG CGGGCCCGGT GCCACCAACG CGAGCATCGG CGTGCACACC
GCCTTCCAGG ACTCCACGCC GATGATCCTG CTGATCGGCC AGGTCGGGCG CGACATGCTC
GAGCGCGAGG CCTTCCAGGA GATCGACTAC CGGCGCATGT TCGGCCCCTT CGTGAAGTGG
GTGGCGCAGA TCGACGACGT CGCGCGCATT CCCGAATTCA TGGCGCGCGC CTGTTCGGTG
GCGATGTCCG GGCGCCCCGG CCCCGTGGTG CTCGCGCTGC CCGAGGACAT GCTGACCGAT
TCCGCCTTTC CCGTTGCGGC GCCGCGCGTG GAAGTGCCGC AGGCGCATCC CGCGCCCGAC
GCGATGCTGC GCCTGCGCGA CCATCTTGCC GCGGCGAAGC AGCCGCTGCT GCTGCTCGGC
GGCCCCGGCT GGAGTGCGGC AGGCCGCGAG GCGATCGAGC GCTTTGCCGT GCAGAACGCG
CTGCCCGTGG CCTGCGCCTT CCGTCGGCAG GACCTGTTCG ACAACCGCCA TCCGCAGTAC
GTGGGGGAGG TCGGCATCGG CATCAATCCC GAGCTGGCCC GCGCGGTGCG CGAGGCCGAC
CTGCTGGTCG CCGTGGGAAC GCGGCTGGGC GAGATCGTCA CGAGCGGCTA CACGCTGCTC
GAGGTGCCGG TGCCGCGCCA GCAGCTGGTG CACGTGCTGG CCTCGGCCGA GGAGCTCGGG
CGCGTGTACC AGCCCGTGCT CAAGATCCTG AGCAGCCCGG TGCCATTCGC GCAGGCGGCT
GCTGCGATGC CACCGGCCGA CCCGGCGCCT TGGCGCGCAT GGCTCGGCCA GCTGCGCGCA
AGCTATGAGC GCTATGTCGC ACCTTCGACG CGCGAGGCGA AGCTCGACCC CGCGCGCGTG
ATCCAGACCC TGGGCGACAC GCTCGAACCC GATGCCATCC TCACCAATGG CGCGGGCAAC
TACAGCGCCT GGGCGCACCG CTACTACCCG TTCTCGCGGC CGAACACGCA GCTCGCACCC
ACCAGCGGCG CGATGGGCTA CGGGGTTCCG GCCGCCATTG CCGCCAAGCT GCAGCATCCG
TCGCGCCAGG TGGTCTGCCT GGCGGGCGAC GGCTGCTTTT TGATGACCTC GCAGGAACTC
GCGACCGTCC AGCGCCATGC GCTCTCGATC CTCTTCATCG TGTTCAACAA CGGCATGTAC
GGCACGATCC GCATGCACCA GGAAGTGAAC TACCCCGGCC GGCCGATCGG CACCGACCTG
TGCAACCCCG ACTTCGTGCG CTATGCGCAG TCGTTCGGGC TGCGTGCCGA GCGGGTGGAG
CGCAGCGACG ACTTCGCTCC CGCGCTGCAG CGCGCCCTGG GCGCAGCCGG CAGCGCGCTC
ATCGAGCTTG CGATCGAGCC CGAGATCCTG ACGCCGCGCG CCACCCTGAG CGAGCTGCGC
GACAAGGCAT TGCGCGCCGC GTCCTGA
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| Protein sequence | MVARWLAMND SPKLRTGGQL IVDALLAQGA DTVFCVPGES YLDVLNALHA QQDALRVVVC
RHEGAAAFMA EAQGKLTGRP GICMVTRGPG ATNASIGVHT AFQDSTPMIL LIGQVGRDML
EREAFQEIDY RRMFGPFVKW VAQIDDVARI PEFMARACSV AMSGRPGPVV LALPEDMLTD
SAFPVAAPRV EVPQAHPAPD AMLRLRDHLA AAKQPLLLLG GPGWSAAGRE AIERFAVQNA
LPVACAFRRQ DLFDNRHPQY VGEVGIGINP ELARAVREAD LLVAVGTRLG EIVTSGYTLL
EVPVPRQQLV HVLASAEELG RVYQPVLKIL SSPVPFAQAA AAMPPADPAP WRAWLGQLRA
SYERYVAPST REAKLDPARV IQTLGDTLEP DAILTNGAGN YSAWAHRYYP FSRPNTQLAP
TSGAMGYGVP AAIAAKLQHP SRQVVCLAGD GCFLMTSQEL ATVQRHALSI LFIVFNNGMY
GTIRMHQEVN YPGRPIGTDL CNPDFVRYAQ SFGLRAERVE RSDDFAPALQ RALGAAGSAL
IELAIEPEIL TPRATLSELR DKALRAAS
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