Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5540 |
Symbol | |
ID | 7975397 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 243615 |
End bp | 244031 |
Gene Length | 417 bp |
Protein Length | 138 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 644796125 |
Product | protein of unknown function DUF1486 |
Protein accession | YP_002947399 |
Protein GI | 239820214 |
COG category | [R] General function prediction only |
COG ID | [COG5485] Predicted ester cyclase |
TIGRFAM ID | [TIGR02096] conserved hypothetical protein, steroid delta-isomerase-related |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAACCA CAAACCGACA GTTCATGACT CGCTTCGTGG AGTTCATCAA CACAGCGGAC CCGCGGCTCG CCACAGAGTT GGTTTCTCCG GACGCCGTGT TTCAAGTTCC TGGGCGCGCC GAACCCGTGC GCGGGCCACA AGGCTACCTG GAGATCATCG GGATGATGCG CGGCGGATTC CCCGACGTTC AATGGACTCT TGAGGAAACC GTCATCGAAG GCGATGTCAT CGCTGCGCGA TTCACGATGC GTGGGACGCA TCGCGGAGCT TTTTTCGGCG TGCCTCCCAC AGGCAAGACG ATTGCCGTGC AAGCGCTGAA CATTTATCGA TTCTCGACCG GGAAGATCGT CTCCGAAGTG GGGCAACCGG ACCTGCTCGG ACTGATGCAG CAGATCGGCG CATTGCCGCG TTCCTGA
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Protein sequence | MQTTNRQFMT RFVEFINTAD PRLATELVSP DAVFQVPGRA EPVRGPQGYL EIIGMMRGGF PDVQWTLEET VIEGDVIAAR FTMRGTHRGA FFGVPPTGKT IAVQALNIYR FSTGKIVSEV GQPDLLGLMQ QIGALPRS
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