Gene Vapar_5540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5540 
Symbol 
ID7975397 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp243615 
End bp244031 
Gene Length417 bp 
Protein Length138 aa 
Translation table11 
GC content59% 
IMG OID644796125 
Productprotein of unknown function DUF1486 
Protein accessionYP_002947399 
Protein GI239820214 
COG category[R] General function prediction only 
COG ID[COG5485] Predicted ester cyclase 
TIGRFAM ID[TIGR02096] conserved hypothetical protein, steroid delta-isomerase-related 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAACCA CAAACCGACA GTTCATGACT CGCTTCGTGG AGTTCATCAA CACAGCGGAC 
CCGCGGCTCG CCACAGAGTT GGTTTCTCCG GACGCCGTGT TTCAAGTTCC TGGGCGCGCC
GAACCCGTGC GCGGGCCACA AGGCTACCTG GAGATCATCG GGATGATGCG CGGCGGATTC
CCCGACGTTC AATGGACTCT TGAGGAAACC GTCATCGAAG GCGATGTCAT CGCTGCGCGA
TTCACGATGC GTGGGACGCA TCGCGGAGCT TTTTTCGGCG TGCCTCCCAC AGGCAAGACG
ATTGCCGTGC AAGCGCTGAA CATTTATCGA TTCTCGACCG GGAAGATCGT CTCCGAAGTG
GGGCAACCGG ACCTGCTCGG ACTGATGCAG CAGATCGGCG CATTGCCGCG TTCCTGA
 
Protein sequence
MQTTNRQFMT RFVEFINTAD PRLATELVSP DAVFQVPGRA EPVRGPQGYL EIIGMMRGGF 
PDVQWTLEET VIEGDVIAAR FTMRGTHRGA FFGVPPTGKT IAVQALNIYR FSTGKIVSEV
GQPDLLGLMQ QIGALPRS