| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5516 |
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| Symbol | |
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| ID | 7975373 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 217974 |
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| End bp | 218789 |
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| Gene Length | 816 bp |
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| Protein Length | 271 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644796102 |
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| Product | ABC transporter related |
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| Protein accession | YP_002947376 |
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| Protein GI | 239820191 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1116] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component |
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| TIGRFAM ID | [TIGR01184] nitrate transport ATP-binding subunits C and D |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.25838 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCCAC AGCAACCGGT ACGCATCAGC TTCGACCACG TGTCGGTCGA TTTTCCGACC
GAGCACGGTC CCATGCGCGT GCTCGACGAC GTGTCGTTCG ACATCCGCAA CGGCGAGTTC
GTCTCCATCA TCGGCCCGTC GGGCTGCGGC AAGACGACGA TGATGAACAT CGTCGGCGGC
TTCGTCCAAC CCACCAGCGG GCAGGTGCTG CTCGACGGCA AGCCGGTGGC CGCGCCGGGG
CCCGACCGCG GCGTGATCTT CCAGGAGTAC GGCGTGTTCC CGTGGCTCAC GGTGCGGCAG
AACATCGAGT TCGGCCTGAA GCTCTCCGCA AGCCGGGTGC CGACGGCCGA GCGCGAGGAG
ATCGTGCAGC GCTACATGCA GCTGATGGGG CTGTCGGACT TTGCGGGGCA TTTTCCCAAG
CACCTGTCGG GCGGCATGCG CCAGCGGCTG GCGATTGCGC GGGCCTACGC GGTGCGGCCG
GAGTTCCTGC TGATGGACGA GCCCTTCGGC GCGCTCGATG CGCAGACCCG CTCGGCCATG
CAGGACCTGC TGCTGCAGGT GCTGCAGAGC GACGGCAAGA CCGTGATGCT GATCACGCAC
TCGGTGGAAG AGGCGATCTA CCTGTCGTCG CGCATCGTCG TGGTCACGGC GCGGCCGGCG
CGCATCCGCA CCGTGATCGA CATTCCCTTC GGCTACCCGC GCGCGGAAAA CCTGCACGAG
GACCCGCGCT TCGCCGAGCT GCGCGCCCAC ATCCGCGAGC TCGTCATGCA GGAATACGCC
GCACAGGCCA GGCAGGCCGT GCGCATGTCG GACTAG
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| Protein sequence | MTPQQPVRIS FDHVSVDFPT EHGPMRVLDD VSFDIRNGEF VSIIGPSGCG KTTMMNIVGG
FVQPTSGQVL LDGKPVAAPG PDRGVIFQEY GVFPWLTVRQ NIEFGLKLSA SRVPTAEREE
IVQRYMQLMG LSDFAGHFPK HLSGGMRQRL AIARAYAVRP EFLLMDEPFG ALDAQTRSAM
QDLLLQVLQS DGKTVMLITH SVEEAIYLSS RIVVVTARPA RIRTVIDIPF GYPRAENLHE
DPRFAELRAH IRELVMQEYA AQARQAVRMS D
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