Gene Vapar_5490 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5490 
Symbol 
ID7975266 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand- 
Start bp192989 
End bp193636 
Gene Length648 bp 
Protein Length215 aa 
Translation table11 
GC content69% 
IMG OID644796077 
Product(2Fe-2S)-binding domain protein 
Protein accessionYP_002947351 
Protein GI239820166 
COG category[C] Energy production and conversion 
COG ID[COG2080] Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACAGTC CCACGATTCC CTTGATCTCG CGGCGCGACG CACTCATTGC CGGCGCCGCC 
ACCGCCACCG CGGCGGCGGT TTCTTCTTCG GCGCCTGCCG AAGCCGCGGC CCCCAAGGCA 
GCCGCAACGC CAGGACCCCG CGCGAAGCTC TCGCTGAACG TCAACGGGCA GGTGCATTCG 
CTCGAGCTCG ACACGCGCAC CACCTTGCTC GATGCACTGC GCGAGCACCT GCACCTGGCC 
GGCACCAAGA AGGGCTGCGA CCATGGCCAG TGCGGCGCCT GCACGGTCCT CCTCGATGGC 
CGGCGCATCA ATTCCTGCCT GACGCTCGCG GTCATGCATG ACGGCGCGCA GGTCACCACC 
ATCGAGGGCC TGGGCACGCC GCAGAACATG CACCCGCTGC AGGCCGCCTT CGTCAAGCAC 
GACGGCTACC AGTGCGGCTA CTGCACGCCC GGGCAGATCT GCTCGGCGGT GGCCGTGCTC 
GACGAGATCA AGCGCGGCGT GCCGAGCCAC GTGAGCGCCG ATCTCACCGC GCGTCCGCTG 
CTGTCGGCCG AGGAATTGCG CGAGCGCATG AGCGGCAACA TCTGCCGCTG CGGCGCCTAC 
TCCAACATCG TCGATGCCAT CACCGAAGTG GCCGGGAGCC GCACATGA
 
Protein sequence
MDSPTIPLIS RRDALIAGAA TATAAAVSSS APAEAAAPKA AATPGPRAKL SLNVNGQVHS 
LELDTRTTLL DALREHLHLA GTKKGCDHGQ CGACTVLLDG RRINSCLTLA VMHDGAQVTT 
IEGLGTPQNM HPLQAAFVKH DGYQCGYCTP GQICSAVAVL DEIKRGVPSH VSADLTARPL 
LSAEELRERM SGNICRCGAY SNIVDAITEV AGSRT