| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5474 |
|---|
| Symbol | |
|---|
| ID | 7975168 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 175161 |
|---|
| End bp | 176069 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644796061 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_002947335 |
|---|
| Protein GI | 239820150 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.361907 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCTCAAGC TCAGTCTCGA AGCCATCGAA CTCGTGGACG CCATCGCGCG CCACGGCTCA
TTTGCAGGCG CCGCCGCGCG CCTGAACAAG GTGCCCTCCA CCATCTCGTA CGCGGTGGGC
AAGCTCGAGG AGCAGTTGGG CATGCTGCTG TTCGTGCGCA ACGGCCCGCG CGTGGCGCTC
ACCGCGGCCG GCGAAGAAAT GCTCAAGGAA GGCCGCTGGC TGCTTGGCGC CGCCGGCGAT
CTCGAGTCGC GCATGCGGCA GATCGCCACC GGGTTCGAAT CGGAGCTGCG GCTGGTGCAC
GACTCGCTGA TTCCCACGCA GGCGCTGATC GACGACATTC GCGCGTTCGA GGCGCTGCGC
TGCGGCACGC GGCTGCGCAT CGGGTGCGAG GCGCTCACCG GCAGCTGGGA GGCATTGCGC
GAAGGACGCG CCGACATCGT CGTGGCCGCG GGCGAAGGGC CGGCCGGCGG GGGTTACCAG
GCGGTGATGG TGGGAAGCCT CGACTTCGCT TTCTGCGTGG CGCCCACGCA TCCGCTCACG
CGCCTGGGCC GGCCGCTGCA GCGCGGCGAC CTGCTGGAGT GCAACGCCAT CGTGGTGAGC
GACAGCGCGC GCACCCTTTC CGACCGCACC GTGGGGCTGC TTGCCGGCCA GCACCACGTC
GCCGTACCCA GCATGGCCGC GAAGATCGCC TGCCAGGCCG CGGGCCTGGG GCACGGATTC
TTACCGCGCG CCTGCATCGA GGGCGACCTG AAGCGCGGCA CGCTCGTCGA GCTGCAGACC
GAAGAGCCGC GCGCACCCGA GGCCTTCTGG CTCGCATGGA AGACCGGCGC CAAGGGAAAG
GCGCTCCAGT GGTGGGTGAA GCAGCTGAAC CGGCAGCTGG TTCCGGCGCT GCTGCCAAGG
TCGGCCTGA
|
|---|
| Protein sequence | MLKLSLEAIE LVDAIARHGS FAGAAARLNK VPSTISYAVG KLEEQLGMLL FVRNGPRVAL
TAAGEEMLKE GRWLLGAAGD LESRMRQIAT GFESELRLVH DSLIPTQALI DDIRAFEALR
CGTRLRIGCE ALTGSWEALR EGRADIVVAA GEGPAGGGYQ AVMVGSLDFA FCVAPTHPLT
RLGRPLQRGD LLECNAIVVS DSARTLSDRT VGLLAGQHHV AVPSMAAKIA CQAAGLGHGF
LPRACIEGDL KRGTLVELQT EEPRAPEAFW LAWKTGAKGK ALQWWVKQLN RQLVPALLPR
SA
|
|---|
| |