| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5396 |
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| Symbol | |
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| ID | 7975857 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 98524 |
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| End bp | 99003 |
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| Gene Length | 480 bp |
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| Protein Length | 159 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644795986 |
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| Product | alkylhydroperoxidase like protein, AhpD family |
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| Protein accession | YP_002947260 |
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| Protein GI | 239820075 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2128] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00778] alkylhydroperoxidase AhpD family core domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.598481 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAACC GTCTCAACTA CATCAAGCAA TCGCCCGAGC TCTTCAAGAA GCTGATCGAG
TTCAGCACGC TCGTGGACAG CGGCACCATC GAACAATCGA TCCGGGACCT TGTCGCGATC
CGCGCGTCGC AGATCAACGG CTGCGCGTTC TGCCTGGACA TGCACATCAA GGAGGCCAGG
ATCCATGGCG AACGCGAGCT GCGCATTCAC CACCTGGCCG CATGGCGCGA ATCGACGCTG
TTCGTTCCGC GCGAGCGTGC GGCGCTGGCC TGGACCGAAG TGCTGACCAG GCTGCCCGAA
CACGGCGTGC CCGACGACAT CTACGAGCGC GTGCGCACGC AGCTGTCGGA AAAGGAGCTT
TCGGACCTGA GCTTCAGCGT CATGGCCATC AACGCATGGA ACCGCGTGAA CGTCGCGTTC
CAGACCGTGC CCGGCTCGTC CGACAAGGCC TTCGGCCTGG ACAAGGCGAA CCTCTCCTGA
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| Protein sequence | MTNRLNYIKQ SPELFKKLIE FSTLVDSGTI EQSIRDLVAI RASQINGCAF CLDMHIKEAR
IHGERELRIH HLAAWRESTL FVPRERAALA WTEVLTRLPE HGVPDDIYER VRTQLSEKEL
SDLSFSVMAI NAWNRVNVAF QTVPGSSDKA FGLDKANLS
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