Gene Vapar_5370 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5370 
Symbol 
ID7975831 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp77017 
End bp77706 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content72% 
IMG OID644795964 
Productholo-ACP synthase, malonate decarboxylase-specific 
Protein accessionYP_002947238 
Protein GI239820053 
COG category 
COG ID 
TIGRFAM ID[TIGR03135] holo-ACP synthase, malonate decarboxylase-specific 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0548916 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCGCCA TGGTTTCGCT GCATCGCCAC CAACTCGCCT GGCTCACCCG GAGCGGGTGG 
GCCGCCGTGC TGGGCCGGCC ATGGGATGTG CAGGCGCGCG ACTGCCTCGC GCATTGGGCC
TTGCATCGAT TGCCGCTGGT CATGACGCGC CAGCCGGCCC ATGCCGGCGC CGATGGATGG
ATCGCGCTGG GTTTGCCCGC GCCTGCGTGC TGGGGCCGGC GCCGGCTTGC GCTGCAGGTG
CCGCACGCTG CGGTGGACGG CCTCGGCGAG TTCCCGCGGC TCGCCGACGT GCAGCACCTG
CCGCCATCGG CGCGAGCTGC CGTGCGCGAA CTGCTCGGCA GGCTCAGCCA ATGCCACGCG
GCGGCACGCG TGTTCGGCAG CTACGGCTGG CAGGCGATCA GCGGTCTCGA GCATGTGCGC
GCGGGCTCCG ATCTCGACTT GTCAGTCGCG GTCGAGGGAG CGGTCCATGC GGATGCCGTG
GCGTGCGCGC TCGGCTTGTT CGAGGCACCG CAGCTCCGGC TGGACGGCGA GCTCATGTTC
GGCGACGGCG CAGCGGTGGC CTGGCGTGAA TGGGCCGAAT GGCGCGGCGG GCGTGCGCGG
GCCGTGATGG TCAAGCGGCT CGACGGCGTG CACCTGCATC GCGATGCCGC ATGGTGTGGC
CATACGGAGC CGATGGAGAT CGCCGCGTGA
 
Protein sequence
MPAMVSLHRH QLAWLTRSGW AAVLGRPWDV QARDCLAHWA LHRLPLVMTR QPAHAGADGW 
IALGLPAPAC WGRRRLALQV PHAAVDGLGE FPRLADVQHL PPSARAAVRE LLGRLSQCHA
AARVFGSYGW QAISGLEHVR AGSDLDLSVA VEGAVHADAV ACALGLFEAP QLRLDGELMF
GDGAAVAWRE WAEWRGGRAR AVMVKRLDGV HLHRDAAWCG HTEPMEIAA