| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5355 |
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| Symbol | |
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| ID | 7975816 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 59161 |
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| End bp | 60147 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644795949 |
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| Product | 2-nitropropane dioxygenase NPD |
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| Protein accession | YP_002947223 |
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| Protein GI | 239820038 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.660089 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACAC GCATCACTGA ACTCTTCGGC ATCCGCCACC CGATCATCCA GGGCGGCATG
CACTACGTCG GCTTTGCCGA GCTCGCCGCG GCCGTGTCCA ACGCCGGCGG GCTCGGGCTC
ATCACGGGCC TCACGCAGCG CACGCCCGAG CTGCTGGCCA AGGAGATCGC CCGCTGCCGA
GAGATGACGG ACCAGCCCTT CGGCGTGAAC CTCACGTTCC TGCCGACCCT GTCCTCGCCG
CCATATCCCG AGTACATCGC GGCCATTGCC GAAGGCGGCG TTCGCATCGT CGAGACGGCA
GGGCGCAGTC CCGAGGCCTA CATGCCCGCG CTCAAGAAGG CGGGCATCAA GGTGATCCAC
AAGTGCACCT CGGTGCGGCA CGCGCTGAAG GCCGAAGCGA TCGGATGCGA CGCCGTGAGC
GTGGATGGTT TCGAGTGTGG CGGCCACCCG GGCGAGGACG ACCTGCCCAA CATGATCCTG
CTGCCGCGCG CGGCCGAGGA GCTGAAGATC CCGTTCGTCG CCTCCGGCGG GATGGCCGAT
GCGCGCAGCC TGGTGGCGGC GCTGGCACTG GGCGCGGAAG GCATGAACAT GGGCACGCGC
TTCGTCGCCA CGCAGGAAGC GCCGATCCAC CAGAACGTGA AGGACGCCAT CGTGGCGGCC
ACCGAGCTGG ACACGCGGCT GGTGATGCGC GGCCTGCGCA ACACGGAGCG CGTGCTGACC
AATGCATCGG TCGAGCAGCT GCTCCGGATC GAGAAGGAAA AGGGCGCCGA TCTCAAGTTC
GAGGACATCA TCGACCAGGT GGCCGGCGTC TACCCGCGCG TGATGCTCGA AGGCGAGATG
GATGCCGGCG CCTGGAGCTG CGGCATGGTG GTCGGCCTGA TCAACGACAT TCCGACGGTG
CAGGAACTGA TCGACCGCAT CATGGAAGAG GCCGAGCAGC TGATCGTTCA GCGGCTCGCC
GGTTTCCTGG AGCCTGCGCT GGCCTAG
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| Protein sequence | MKTRITELFG IRHPIIQGGM HYVGFAELAA AVSNAGGLGL ITGLTQRTPE LLAKEIARCR
EMTDQPFGVN LTFLPTLSSP PYPEYIAAIA EGGVRIVETA GRSPEAYMPA LKKAGIKVIH
KCTSVRHALK AEAIGCDAVS VDGFECGGHP GEDDLPNMIL LPRAAEELKI PFVASGGMAD
ARSLVAALAL GAEGMNMGTR FVATQEAPIH QNVKDAIVAA TELDTRLVMR GLRNTERVLT
NASVEQLLRI EKEKGADLKF EDIIDQVAGV YPRVMLEGEM DAGAWSCGMV VGLINDIPTV
QELIDRIMEE AEQLIVQRLA GFLEPALA
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