| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5318 |
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| Symbol | |
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| ID | 7975605 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 16081 |
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| End bp | 17607 |
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| Gene Length | 1527 bp |
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| Protein Length | 508 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644795912 |
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| Product | ABC transporter related |
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| Protein accession | YP_002947186 |
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| Protein GI | 239820001 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.398307 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACCCA TCGTCACCAT CCGCGACCTC TGCAAGTCCT TTGCCGGCGT GCGCGCACTC
GACAAGGCGC AGTTCGACCT GCTGCCCGGC GAGGTGCATG CGCTGATGGG CGAGAACGGC
GCGGGCAAGT CCACCCTCAT GAAGGTGCTG GCCGGCGTCT ACGGCAAGGA TTCCGGCGAA
GTGCTGATCG ACGGCCAGCC CGTGGACATC GCGAGCCCGC GCGCGGCGCA GGCGCTGGGC
ATCGGGATCA TCCACCAGGA ACTCAACCTG ATGAACCACC TGAGCGCCGC GCAGAACATC
TTCATCGGCC GCGAGCCGCG CGGGCGCTTC GGCCTCTTCA TCGACGAAGA CACGATGCGC
ACCCAGGCCG AGCGCATCTT CGCGCGCATG AACCTGCGGC TCGACCCGCA CACGCCGGTC
GGCGAACTCA CGGTGGCCAG GCAGCAGATG GTGGAGATCG CCAAGGCGCT CTCGTTCGAC
TCGCGCGTGC TCATCATGGA CGAGCCCACC GCCGCGCTCA ACAACGAAGA AGTGGCCGAC
CTGTTCCGCA TCATCGGCCA GCTCCGGTCG CAGGGCGTGG CCATTGTCTA CATCTCGCAC
AAGATGGACG AACTCAAGCG CATCGCCGAC CGCGTGACCG TGATGCGCGA CGGCCAGTAC
ATCGCCACCG TGCCGATGGC CGGCACGCCG ATGGACTCGC TGATCGCGAT GATGGTGGGC
CGCCAGCTCA CCGAGGTGGA GAACGACTTT CCCGACACCT CGGGCAACGA GGTCGTGCTC
GAGGCGCGCG GCATCACGCG CGGCGCGCTG GTGCGCAACG CCAGCTTCGT GCTGCGCAAG
GGCGAGATCC TGGGCTTTGC GGGGCTCATG GGCGCGGGCC GCACCGAGCT CGCGCGCGCG
GTGTTCGGCG CCGACCCCAT CGATGCGGGC GAGGTCTTGG TGCACGGCAG GAAGGTGTCG
ATCAAGTCGC CCGAAGATGC CGTGCGGCAC GGCATCGGCT ATCTCTCCGA AGACCGCAAG
CACTTCGGCC TGGCCACCGG CATGGACGTG GAAACCAACA TCGCGCTGCC GAGCATGAAG
AAGTTCCTGT CGATGGGCGT CTTCATCGAC CAGGCCGCCA TCGAGGCCGC GGGCGAGCGC
TACGTGAAGC AGCTCAGCAT CAAGACGCCC TCGGTGCGCC AGCAGGTGCG GCTGCTCTCG
GGCGGCAACC AGCAGAAGAT CGTGATCGCC AAGTGGCTGC TGCGCGACTG CAGCGTGCTC
TTCTTCGACG AGCCCACGCG CGGCATCGAC GTGGGCGCCA AGGCCGAGAT CTACCGCCTG
CTCAACCAGC TGGCAGCGGA GGGCAAGGCC ATCGTGATCA TCTCCTCGGA GCTGCCCGAG
ATACTGCGCG TGAGCCACCG CGTGCTGGTG ATGTGCGAAG GCCGCATCAC CGGCGAACTG
GCGGGGCGCG AAGCCTCGCA GGAAAAGATC ATGCAGCTCG CCACCCGGCG TGAAACCGCT
GCCGCTGCAG CTGACGCCGC CGCCTGA
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| Protein sequence | MAPIVTIRDL CKSFAGVRAL DKAQFDLLPG EVHALMGENG AGKSTLMKVL AGVYGKDSGE
VLIDGQPVDI ASPRAAQALG IGIIHQELNL MNHLSAAQNI FIGREPRGRF GLFIDEDTMR
TQAERIFARM NLRLDPHTPV GELTVARQQM VEIAKALSFD SRVLIMDEPT AALNNEEVAD
LFRIIGQLRS QGVAIVYISH KMDELKRIAD RVTVMRDGQY IATVPMAGTP MDSLIAMMVG
RQLTEVENDF PDTSGNEVVL EARGITRGAL VRNASFVLRK GEILGFAGLM GAGRTELARA
VFGADPIDAG EVLVHGRKVS IKSPEDAVRH GIGYLSEDRK HFGLATGMDV ETNIALPSMK
KFLSMGVFID QAAIEAAGER YVKQLSIKTP SVRQQVRLLS GGNQQKIVIA KWLLRDCSVL
FFDEPTRGID VGAKAEIYRL LNQLAAEGKA IVIISSELPE ILRVSHRVLV MCEGRITGEL
AGREASQEKI MQLATRRETA AAAADAAA
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