| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5304 |
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| Symbol | |
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| ID | 7975591 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 1034 |
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| End bp | 1903 |
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| Gene Length | 870 bp |
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| Protein Length | 289 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644795898 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002947172 |
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| Protein GI | 239819987 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATACC CCGATTTCCA GATCGACTGG CTGCGCGCCC TGGTGGCGGT GGTGGATGCC
GGCTCGTTGT CGGCCGCGGC ACCGCTGGTC CACCGCTCCC AGTCGGCGGT GAGCATGCAG
ATCAAGAAGC TGGAGAACGC GCTCGGCCAG GCCGTGCTGC TGCGCGGCCC GCGGCACCTG
GAAGTGACGC CGGCAGGCGC GCAGCTGCTG GGCTATGCGC GCCGCATGCT CGAACTGCAG
TCGGAAACGC AGAACGCGAT GTTCGGCCCG GAGCTCGCGG GCCGCGTGCG GCTCGGTGTG
CCAGACGACT ACGCCTCCAC CTACCTGACG CCGGTGCTGC GCAGCTTTGC CGGCCGCTAC
AAGGGCGTGG AAATCGAGCT GACCTGCGAG CAGTCGACCT CCCTCATTCC CAAGATCGCG
CGGGGCGAGC TGGACCTGGC ACTGGTCTCC CGCGACAAGC CGCAACGCGG GCAGCTCCTG
TTCCAGGAAC CCCTGGTGTG GGTCGGCACG GCACAGCATG AAGCCTGGCG CCGCAATCCG
TTGCCGATTG CCGTCTACGA GGCGGGCAGC ATGGCCCGAA CTGCCGCGCT CTCGAGCCTG
GCCGCCAGGC GGCGCGCCTA TCGCATCGTC TATCACAGCT CCAGCCTCGC CGGCCAGCTC
GCGGCCGTGG AGAGCGGCCT GGCCGTGGCC GTGTTCACGC GCTGCAGCGT TCCGCCTCAC
CTGCAGATAT TGCAGAACCT GCCCAGCGGC TTCGACCTGC CCAGACTCAA GTCGATGGAC
GTGACGGCCT TGCGCAGCAA GGTGTCGCTG CGCTCGCCCG CGGTGGATGC GATGTACGAA
CAGATGGTGC GGACCTTGAG CCCGGCATAG
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| Protein sequence | MKYPDFQIDW LRALVAVVDA GSLSAAAPLV HRSQSAVSMQ IKKLENALGQ AVLLRGPRHL
EVTPAGAQLL GYARRMLELQ SETQNAMFGP ELAGRVRLGV PDDYASTYLT PVLRSFAGRY
KGVEIELTCE QSTSLIPKIA RGELDLALVS RDKPQRGQLL FQEPLVWVGT AQHEAWRRNP
LPIAVYEAGS MARTAALSSL AARRRAYRIV YHSSSLAGQL AAVESGLAVA VFTRCSVPPH
LQILQNLPSG FDLPRLKSMD VTALRSKVSL RSPAVDAMYE QMVRTLSPA
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