| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5291 |
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| Symbol | |
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| ID | 7972724 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5615300 |
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| End bp | 5616082 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644795885 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_002947159 |
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| Protein GI | 239818249 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCCGT CTCCGCTTGT CTTCATCACC GGCGCATCGA GCGGCATCGG CCAGGCCCTG
GCCGCCAGCT TCTACGAGGC GGGCTACCGC CTGGCGCTGG TGGCGCGGCG CACCGCGGAG
ATCGAATCCT GGGCCGGCGA GCGCCAGCTG GACCCCGCCC GCTACCAGGT CTATGGCGCG
GACGTCGCGC AAACCGACAG CATCGTGGCC GCCGGCGCCG CCTGCATCGC GCGCCAGGGC
CTGCCCGACG TGGTGATTGC CAACGCCGGC ATCAGCGTGG GTATCGACAC CGCGGAGCGC
GAGGACATCG AGGTGATGGC CCGGACCTTC GCCACCAACA ACGTCGGCCT GATGGCCACC
TTCCATCCTT TCGTGGCCGC GATGCGGCAG CGCGGCAGCG GCCGGCTGGT CGGCATCGCG
AGCGTCGCGG CCATTCGCGG GCTGCCGGGG CACGGCGCCT ACTGCGCCAG CAAGGCGGGC
GTGGTCGCGT ATTGCGAGAG CCTGCGCGGC GAACTGCACA ACAGCGGCGT CAAGGTCGTC
ACGCTCTGCC CCGGCTACAT CGACACGCCG CTGACCCAGG GCAACCGCTA CGGCATGCCC
TTTCTCATGA AGGCCCGGGA CTTTGCCGAC CAGGCGCTGC GCGCCATCGA GGCGGGCACC
AGCTACCGCG TGATTCCCTG GCAGATGGGC GTGGTCGCCA AGCTGATGCG CATGCTGCCG
AATGCGCTGC TCGACCGCGC CGTGCAGGGC CGCGCCCGCA AGAAGCGCAG CGGCGAAAGC
TGA
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| Protein sequence | MSPSPLVFIT GASSGIGQAL AASFYEAGYR LALVARRTAE IESWAGERQL DPARYQVYGA
DVAQTDSIVA AGAACIARQG LPDVVIANAG ISVGIDTAER EDIEVMARTF ATNNVGLMAT
FHPFVAAMRQ RGSGRLVGIA SVAAIRGLPG HGAYCASKAG VVAYCESLRG ELHNSGVKVV
TLCPGYIDTP LTQGNRYGMP FLMKARDFAD QALRAIEAGT SYRVIPWQMG VVAKLMRMLP
NALLDRAVQG RARKKRSGES
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