Gene Vapar_5289 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5289 
Symbol 
ID7972722 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp5613656 
End bp5614219 
Gene Length564 bp 
Protein Length187 aa 
Translation table11 
GC content66% 
IMG OID644795883 
Productprotein of unknown function UPF0016 
Protein accessionYP_002947157 
Protein GI239818247 
COG category[S] Function unknown 
COG ID[COG2119] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGCTT TTCTCGTTGC AACCGGCGTG GTTGCGCTCG CCGAAATGGG CGACAAGACC 
CAACTGCTGG CTCTTCTGCT CGCGGCGCGT TTCCGGAAAC CCTGGCCGAT CGTGCTCGGG
ATCTTCGCGG CCACCATCGT CAACCACGCG CTGGCCGGCG CGGTCGGCAA CTGGATCACC
CACTGGCTCG GGCCCGACGT GCTGCGCTGG ATCCTGGGGG GCTCGTTCAT CGCCATGGCG
GCGTGGATGC TGATTCCCGA CAAGCTCGAC GAAGACGACG CGCCCGCGGC CAGCCACTAC
GGGGTCTTCG GCACCACGCT GGTCGCGTTC TTCCTGGCCG AAATGGGCGA CAAGACCCAG
ATCGCGACCG TCATGCTGGC CGCCCGCTTC ACGCAGGACT ACGTCTGGGT GGTCGCCGGC
ACGACGCTCG GCATGATGCT GGCCAACGCA CCGGTGGTGT GGCTCGGCGA GAAGATCGTA
CGGCGCGTGC CCATCAAGCT GGTGCACGGC GTCTCGGCCG CGATCTTCCT CGTGCTCGGC
ATCGTGATGA TCGTCGGCTG GTAG
 
Protein sequence
MEAFLVATGV VALAEMGDKT QLLALLLAAR FRKPWPIVLG IFAATIVNHA LAGAVGNWIT 
HWLGPDVLRW ILGGSFIAMA AWMLIPDKLD EDDAPAASHY GVFGTTLVAF FLAEMGDKTQ
IATVMLAARF TQDYVWVVAG TTLGMMLANA PVVWLGEKIV RRVPIKLVHG VSAAIFLVLG
IVMIVGW