Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5289 |
Symbol | |
ID | 7972722 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 5613656 |
End bp | 5614219 |
Gene Length | 564 bp |
Protein Length | 187 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644795883 |
Product | protein of unknown function UPF0016 |
Protein accession | YP_002947157 |
Protein GI | 239818247 |
COG category | [S] Function unknown |
COG ID | [COG2119] Predicted membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAGCTT TTCTCGTTGC AACCGGCGTG GTTGCGCTCG CCGAAATGGG CGACAAGACC CAACTGCTGG CTCTTCTGCT CGCGGCGCGT TTCCGGAAAC CCTGGCCGAT CGTGCTCGGG ATCTTCGCGG CCACCATCGT CAACCACGCG CTGGCCGGCG CGGTCGGCAA CTGGATCACC CACTGGCTCG GGCCCGACGT GCTGCGCTGG ATCCTGGGGG GCTCGTTCAT CGCCATGGCG GCGTGGATGC TGATTCCCGA CAAGCTCGAC GAAGACGACG CGCCCGCGGC CAGCCACTAC GGGGTCTTCG GCACCACGCT GGTCGCGTTC TTCCTGGCCG AAATGGGCGA CAAGACCCAG ATCGCGACCG TCATGCTGGC CGCCCGCTTC ACGCAGGACT ACGTCTGGGT GGTCGCCGGC ACGACGCTCG GCATGATGCT GGCCAACGCA CCGGTGGTGT GGCTCGGCGA GAAGATCGTA CGGCGCGTGC CCATCAAGCT GGTGCACGGC GTCTCGGCCG CGATCTTCCT CGTGCTCGGC ATCGTGATGA TCGTCGGCTG GTAG
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Protein sequence | MEAFLVATGV VALAEMGDKT QLLALLLAAR FRKPWPIVLG IFAATIVNHA LAGAVGNWIT HWLGPDVLRW ILGGSFIAMA AWMLIPDKLD EDDAPAASHY GVFGTTLVAF FLAEMGDKTQ IATVMLAARF TQDYVWVVAG TTLGMMLANA PVVWLGEKIV RRVPIKLVHG VSAAIFLVLG IVMIVGW
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