Gene Vapar_5274 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5274 
Symbol 
ID7972707 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp5596857 
End bp5598266 
Gene Length1410 bp 
Protein Length469 aa 
Translation table11 
GC content71% 
IMG OID644795868 
ProductSurA domain protein 
Protein accessionYP_002947142 
Protein GI239818232 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0760] Parvulin-like peptidyl-prolyl isomerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACACA TCCGTTCCAT CCTGACCCTG GGCTGCCTCG CGGCACTGGC CGCGGCCTCG 
GGCGCGCAAG GCCTGCGTCC CGGTGGCGGC AGCGGCATCA CCGACATCAT GCGCGCCGGT
CCCCGGCTGG CGCCACCGGC GCCGCGCACC GCGCCTTCCA CCGCCGCGCC GGTGCAGCGC
GCGGCCGAAT ACATCGTCGC ACTGGTCAAT TCCGAACCGA TCACCAACAC CGAGGTGCAG
TCGCGCGTCA CGCGCCTGAT CCGCGAAAAC GCCGAAGCCG AGCGCGTGCC GCGCGCCGAG
CTCACGCGCC TGGTGCTCGA GCGCCTGATC TCCGAGCGCG CACAGCTCCA GCTGGCCAAG
GAAAACGGCA TCAAGGTGGA CGAGGTCGCC ATCGACCAGG CCGAGCAGAC CGTGGCGCGG
CAGAACCAGA TCAGCGTCGA GGAGCTGCGC CGCCGCGTGG TGGCCGAGGG TATTTCGCAG
CGCGAATTCC GCAACGACCT GCGCGACCAG CTGCTGCTCA CGCGCCTGCG CGACCGCGAG
GTCGAGTCCA AGGTCAAGAT CAGCGACGCC GAGGCCGACG AATACCTGCG CGACCAGCGC
AACGCCCCCA CCAAGGACGC GGCGCTGCAG AACATCAACC TCGCGCACCT GCTGGTCGCC
GTGCCCGAGA ACGCCACCGA GGCGCAGGTC GCCACCTTGC AGCAGCGGGC CCAGGGCCTC
GCGCAGCGCG CCCGCGCCGG CGAAGACTTC GCCAAGCTGG TGCAGGAGAA CTCCGATTCG
CCGGACCGCG CCAATGGTGG CGCCGTCGGC ATGCGCACCG CCGACCGCTA TCCGTCGCTG
TTCGTCGAAG CCACGCAGTC GACGCCGGTC AACGGCATTG CCGGCCCGAT CCGCTCGGGT
GCGGGCTTCC ACGTGCTCAA GGTGCTGGCC AAGGCCCAGC TCGGCGCCAC CGACGCCACC
GTGACCCAGA CGCAGGTGCG CCACATCCTG CTGCTCAACG ACCCGAAGCG CACCACCGCC
CAGGCCGTGG CGCAGCTCGC GGAATTCAAG CGCCGCCTGC AGGCCCGCAC GGCCGACTTC
GCCGGCCTGG CGCGCGACAA CTCGCAGGAT GCGAGCGCCA AGGAGGGCGG CGACCTGGGC
TGGTCGCGCC CGGGCCAGTT CGTGCCCGAG TTCGAGGAAG CCATGGACCG CCTGGCGCCG
GGCCAGATCA GCGACCCGGT GGTCTCGCGC TTCGGCGTGC ACCTGATCCA GGTGGTCGGC
CGGCGCGAAT CCAAGCTCAC GCAGGCCGAG CAGCGCGAAG CCGCGCGGGC CGTGCTGCGC
GAGCAGCGGG TCGAGGAAGC CTTCAGCACG TGGGTGCAGG AAACGCGCGC GCGCGCCTAC
GTCGAATACC GCGAGCCGCC CCAGTCCTGA
 
Protein sequence
MKHIRSILTL GCLAALAAAS GAQGLRPGGG SGITDIMRAG PRLAPPAPRT APSTAAPVQR 
AAEYIVALVN SEPITNTEVQ SRVTRLIREN AEAERVPRAE LTRLVLERLI SERAQLQLAK
ENGIKVDEVA IDQAEQTVAR QNQISVEELR RRVVAEGISQ REFRNDLRDQ LLLTRLRDRE
VESKVKISDA EADEYLRDQR NAPTKDAALQ NINLAHLLVA VPENATEAQV ATLQQRAQGL
AQRARAGEDF AKLVQENSDS PDRANGGAVG MRTADRYPSL FVEATQSTPV NGIAGPIRSG
AGFHVLKVLA KAQLGATDAT VTQTQVRHIL LLNDPKRTTA QAVAQLAEFK RRLQARTADF
AGLARDNSQD ASAKEGGDLG WSRPGQFVPE FEEAMDRLAP GQISDPVVSR FGVHLIQVVG
RRESKLTQAE QREAARAVLR EQRVEEAFST WVQETRARAY VEYREPPQS