| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5248 |
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| Symbol | |
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| ID | 7972681 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5569490 |
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| End bp | 5570863 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 644795842 |
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| Product | Amidase |
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| Protein accession | YP_002947116 |
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| Protein GI | 239818206 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000283595 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCACAC CGCTCGATCC CACCGCCCTG CTCGCTGCAG GCGCCGCCCC ATCGGCCAGG
GCACTGGCCG CCGGCCAGCT GAGCGCCGCC GCGCTGTGCG AAGCCGCCAT CGCCCGCATC
GAGGCGCTCG ACGGTGCGCT CAACGCGGTG GTGGTGCGCG ACTTCGACCG CGCGCGCCGC
CAGGCCGCCG AAGCCGACGC GGCCCTTGCG CGCGGCGAGC GCCGGCCGCT GCTGGGCGTG
CCGATGACGG TGAAGGAGGC CTTCAACGTT GCCGGCCTGC CGACCAGCTG GGGCCTGCCG
CAGTTCCGCG ATTTCGTGCC GCAGCAGGAC GCCGTGGCCG TGGCGCGCCT CAAGGCGGCG
GGCGCGGTGA TTCTCGGCAA GACCAACGTG CCGCCGGCGC TGGCCGACTG GCAGAGCGCC
AATCCGGTGT ACGGCCGCAC GGTGCACCCG CTCGATGCCG GGCGCACGCC GGGCGGCTCG
TCGGGCGGCG GCGCGGCGGC GGTGGCCACC GGCATGGCGG CGCTGGAGCT GGGCTCCGAC
CTCACGGGCT CGCTGCGTGT TCCCGCGAGC TTTTGCGGCG TGTACGCGCA CAAGCCGAGC
CACGGCCTGC TGCCGACGCG CGGCTTCGCG TTTCCGGGCA CCGAGGAGGC GCTGGCCTCA
CTGCCCTCGG TGATCGGACC GATCGGCCAT GGCGCCGAGG ACCTCTCGCT GGCGCTCGAC
GTGCTGGCCG GGCCCGATGC GGCCCACGTG GCGCAGGGCC GCTTCATGCT GCCGGCGGCG
CGCCATGCGG CGGCGAAGGA CTGGCGCGTG CTGGTGGTCA CCGCGCATCC GCAGGCCGCG
GTGGCGGCCG ATGTGCGCGC CGCCGTGGAA GGCGCCGGGC AGCGGCTGGC AAAGGCCGGC
GCCTCAGTGG CCCGAGCCTC GGACCTGCTG CCTGACCTGG CCGAGATCGG CGACACCTAC
GGCCAGATCG TGCAGACCGT GCTCGCGCAT GCCGAGCCCG GCGGCCGCTC GCCGATGCAG
CTTCGCACCT GGTTCGACCT GCTGGCCACG CGCACGCGCA TCCGGGCGCA GCTGCGCACG
CTGTTCACGC AATTCGACGC CGTGCTGTGC CCGGCGGTGG GTTGTGCAGC CTTCGAGCAT
GTGGCCGAAC CCGATTTCGA GAAGCGTACG CTCACTATCG ACGGAAGGCC CACGCCCTAT
GGCACGCTGG CGGCCTGGTC CGGGCTCGCG AGCCTGGGCG GCCTGCCCGC CACGGTCGCG
CCCGCGGGCT TCACGGCCGG CGGATTGCCG CTGGGCGTGC AGATCGTCGG CCCGTATTTC
GAGGATCGCA GCACCCTCGC GCTGGCCGGG CTGCTGGCCA GAAGTGCCGC TTGA
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| Protein sequence | MATPLDPTAL LAAGAAPSAR ALAAGQLSAA ALCEAAIARI EALDGALNAV VVRDFDRARR
QAAEADAALA RGERRPLLGV PMTVKEAFNV AGLPTSWGLP QFRDFVPQQD AVAVARLKAA
GAVILGKTNV PPALADWQSA NPVYGRTVHP LDAGRTPGGS SGGGAAAVAT GMAALELGSD
LTGSLRVPAS FCGVYAHKPS HGLLPTRGFA FPGTEEALAS LPSVIGPIGH GAEDLSLALD
VLAGPDAAHV AQGRFMLPAA RHAAAKDWRV LVVTAHPQAA VAADVRAAVE GAGQRLAKAG
ASVARASDLL PDLAEIGDTY GQIVQTVLAH AEPGGRSPMQ LRTWFDLLAT RTRIRAQLRT
LFTQFDAVLC PAVGCAAFEH VAEPDFEKRT LTIDGRPTPY GTLAAWSGLA SLGGLPATVA
PAGFTAGGLP LGVQIVGPYF EDRSTLALAG LLARSAA
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