Gene Vapar_5242 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5242 
Symbol 
ID7969901 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp5563776 
End bp5564456 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content68% 
IMG OID644795836 
Productpolar amino acid ABC transporter, inner membrane subunit 
Protein accessionYP_002947110 
Protein GI239818200 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0765] ABC-type amino acid transport system, permease component 
TIGRFAM ID[TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACTACG AATGGGACTT CAGCGGCGTC TGGGCGCACC GCGACATGCT GCTCGCGGGC 
TTCCTCGGCA CGATGAAGAT CGCCGCCGTC GCCATTGCGC TGGGCGTGGT GTTCGGCGTC
GTGCTCGCGG CCCTGCGGCT CTCGGGCAGG GCGTGGCTCG CCAGGCCGGC GCTGTGGGTG
ATCGAGTTCT ATCGCAACAC GCCGCCGCTG GTGCATTTCT TCTGGGCCTT CTATGCACTG
CCGGTGCTCA TCGGCGTGAG CCTGGACCCG TACGCGGCGG CGGTCATTGC GCTGTCGACG
CAGTCGGGCG CGTTCTTCGC CGAGGTGTTC CGCGGCGGCC TGGTGTCGAT CGAACGCGGG
CAGTGGGAAG CGGCGCGCGC CGTCGGCATG CGCTCGCACC AGGCCTTGCG CCGCGTGGTG
CTGCCGCAGG CGCTCGCGCG CATGCTGCCG CCGTTCATCG AGCGTTCGTT CGAACTCATC
AAGACCACCG CGCTGGCCTC CACGCTGGCC TATTCCGACC TGCTCTACCA GGCCATGCAG
CTCAACTCGA TCACCTTCCG GCCGCTGGAG GTGTACACGG TGGTCGCGGC CATCTTCTTC
CTGGCGCTGT TCTCGCTGAG CCTCGTCGCA CGCGTGGCCG AGCACCGCCT GGCCATCTCC
ACCCGCGCGG CAGGACACTG A
 
Protein sequence
MNYEWDFSGV WAHRDMLLAG FLGTMKIAAV AIALGVVFGV VLAALRLSGR AWLARPALWV 
IEFYRNTPPL VHFFWAFYAL PVLIGVSLDP YAAAVIALST QSGAFFAEVF RGGLVSIERG
QWEAARAVGM RSHQALRRVV LPQALARMLP PFIERSFELI KTTALASTLA YSDLLYQAMQ
LNSITFRPLE VYTVVAAIFF LALFSLSLVA RVAEHRLAIS TRAAGH