Gene Vapar_5240 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5240 
Symbol 
ID7969899 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp5562384 
End bp5563067 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content68% 
IMG OID644795834 
Producttranscriptional regulator, GntR family 
Protein accessionYP_002947108 
Protein GI239818198 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGACCC TCCCCGATTT CGCACCCGCT CCCTCGGCCA CGCGGCGCGA CTACGTGGCG 
CAGACCCTGC GCGACGCCAT CCTCACCGGC AGGATCGCGC CCGGCACGCA GCTGGTCGAG 
AGCCACTTCG CCACCCAGTT CGGCGTGAGC CGCGGCCTGC TGCGCGAGGC GATCCGCGAG 
CTCATCGAGA CCGGCCTGCT CGTGAACAAG CCCTATGCCG GCACCTACGT GACCGACATC 
AGCGAGGAAA CCATGAGCGA CGTGTACGAG GTGCGCCGCA TCATGGAAAG GCAGGCGTTC 
ATCCGCCTGT GGCCGCAGCG CGACGAAGCC TTTCGCGCCG AGATGACCGC GCGCTACGAG 
GCATTGGCCG AAGCGGCCTC CAGCAGCGAG CTGCATCGCG AGAGCGCGGC CGAGGCCCAC 
TTCCACGGCC TGGTCTACGA GCGCTGCGGC AATCAGCTGC TGCTCGACGT GTGGCGCCAG 
ATGACGCAGA AGATCCAGCT CGGCTTTGCG GTGTGCCGCC TGACGCATGC GCCCAAGCCC 
GACTTCGCGG AGAACCACCA CCTGTTCCTC GAGCTGGCCA TCGGCAACGA CCTCAACGCG 
ATGCTCGAGG AGCTCGATGC GCACCTGCTG CGCGGCCTGT CGACCATTCG GCACGCGCTG 
CGCAACACGG CCCCGCGCGG CTGA
 
Protein sequence
MKTLPDFAPA PSATRRDYVA QTLRDAILTG RIAPGTQLVE SHFATQFGVS RGLLREAIRE 
LIETGLLVNK PYAGTYVTDI SEETMSDVYE VRRIMERQAF IRLWPQRDEA FRAEMTARYE 
ALAEAASSSE LHRESAAEAH FHGLVYERCG NQLLLDVWRQ MTQKIQLGFA VCRLTHAPKP 
DFAENHHLFL ELAIGNDLNA MLEELDAHLL RGLSTIRHAL RNTAPRG