| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5227 |
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| Symbol | |
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| ID | 7969886 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5548631 |
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| End bp | 5549659 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644795821 |
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| Product | Histone deacetylase |
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| Protein accession | YP_002947095 |
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| Protein GI | 239818185 |
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| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.994871 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGTCG TCTACAGCGA CACCCACAAG GACCACGACC CGCAGCTCTT CATGGTGCGC
GGCAAGCTCA AGCGCAGCAA CGAGCAGCCC GAGCGCGCCT TCCGGCTGCT CGAGGCGGTG
CAGCGGGAGG GCCACGAGAT CGTTGCCCCG CGCGACTTCG GCGCCGGCCC GCGCGCCGCC
ATCCACACGC CCGAGTACCT GCGCTTTCTC GAAACCGCCT ACGCGCGCTG GCAGCTGCTG
GACGATCCGT CCGAAGAGGT GATGCCCAAC ATCCATCCGT TCCCGGGCCA GCCCTGCACC
TACCCCGACA GCGTGGTCGG CCAGGCCGGC TTCCACATGG GCGACAACGC CTGCTCGATC
GGCACGCGCA CCTGGGAGGC CGCCGTCGCC TCGGCGAACA TGGCAACGCA TGCGGCGCAG
CTCGTTCGGG GTGGCGAGCG CGTGGCCTAT GCGCTGTGCC GCCCGCCCGG CCACCACGCG
TATGCCGACC GCGCCAACGG CTTCTGCTAC CTCAACAACG TGGCGATTGC CGCGCAATAT
CTGCGCGGCG TGCACGACCG CGTGGCCATC CTCGACATCG ACGTGCACCA CGGCAACGGC
ACGCAGGGCA TCTTCTACCG CCGCGCCGAC GTGCTGACCA TCTCGCTGCA CGGCGATCCG
CGCAACTTCA CGCCCTTCTT CATCGGCCAC GCGCACGAGC GCGGCGAAGG CGAAGGCCTG
GGCTACAACA TCAACAAGCC GCTCGCGCTG GGCACCGACA TCGACGGCTA CCTGCCCGCG
CTGCGCGACG CCTGCGACAG CATCCGCGCC TACGCGCCCG GCGCGCTGGT GGTGGCGCTG
GGCCTCGACG CACACGAGCG CGATCCCTAC AAGGGCATGA AGATCCAGAC CGCCGGCTTC
GCCGTGCTGC TGGCCGAGAT CGCGCGCTTG GGACTGCCCA CGGTGCTGGT GCAGGAAGGC
GGCTATCTGT CCGATGACCT GGGGCCCAAC ATCGCGAGCG CGCTGCGCGG TTTCGAGAGC
GCGGCATGA
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| Protein sequence | MKVVYSDTHK DHDPQLFMVR GKLKRSNEQP ERAFRLLEAV QREGHEIVAP RDFGAGPRAA
IHTPEYLRFL ETAYARWQLL DDPSEEVMPN IHPFPGQPCT YPDSVVGQAG FHMGDNACSI
GTRTWEAAVA SANMATHAAQ LVRGGERVAY ALCRPPGHHA YADRANGFCY LNNVAIAAQY
LRGVHDRVAI LDIDVHHGNG TQGIFYRRAD VLTISLHGDP RNFTPFFIGH AHERGEGEGL
GYNINKPLAL GTDIDGYLPA LRDACDSIRA YAPGALVVAL GLDAHERDPY KGMKIQTAGF
AVLLAEIARL GLPTVLVQEG GYLSDDLGPN IASALRGFES AA
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