| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5202 |
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| Symbol | |
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| ID | 7969861 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5523766 |
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| End bp | 5526708 |
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| Gene Length | 2943 bp |
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| Protein Length | 980 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644795796 |
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| Product | DNA topoisomerase III |
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| Protein accession | YP_002947070 |
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| Protein GI | 239818160 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.221506 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGACCT TGGTAATCGC AGAAAAGCCG TCGGTGGCAC AGGACATCGT CCGTGCACTC
ACGCCCGTGG CCGGCAAGTT CGACAAGCAT GACGAGCATT TCGAGAACGA CAGCTACGTG
GTAACCAGCG CGGTCGGCCA CCTGGTCGAA ATCCAGGCCC CGGAGGAGTT CGACGTCAAG
CGGGGCAAGT GGAGCTTCGC GAACCTGCCG GTGATTCCGC CGCATTTCGA CCTGAAGCCG
GTCGACAAGA CCAAGACGCG CCTGAACGCC GTGGTCAAGC AGGCCAAGCG CAAGGACGTG
ACGCAACTCA TCAACGCCTG CGACGCGGGC CGCGAGGGCG AGCTGATCTT CCGCCTGATC
GAGCAGTACG CGGGCGGCAA GACCGGCCTG AACAAGCCCG TGAAGCGCCT GTGGCTGCAG
TCGATGACGC CGCAGGCCAT CCGCGACGGC TTCGACGCGC TGCGCACCGA AAAGCAGATG
CAGGGCCTGG CCGACGCCGC GCGCTCGCGC TCGGAGGCCG ACTGGCTGGT GGGCATCAAC
GGCACGCGCG CCATGACGGC CTTCAATTCG CGCGACGGCG GCTTCTTTTT GACGACCGTG
GGCCGCGTGC AGACGCCCAC GCTGTCGGTG GTGGTCGAGC GCGAGGAAAA GATCCGCAAG
TTCGTGAGCC GCGACTACTG GGAAATCCAC GGTGTGTTCC AGGCCGAGGC CGGCCAGTAC
CCGGGCAAGT GGTTCGATGC CAACTTCAAG AAGCCGCCGC CCGGCCCCGA CGGCACGGCC
GACGCCGAGA TCCGCGCCGA CCGCGTGTGG AGCGAGCGCG AGGCGCGCGA GATCGCCGAT
GCGGCGCGCG GCAAGCCCGC CAGCGTCACC GAGGAAAGCA AGCCCACCAC GCAGGCTTCG
CCGATGCTGT TCGACCTCAC CTCGCTGCAG CGCGAGGCCA ACGGCCGCTT CGGCTTCTCG
GCCAAGACCA CGCTGGCGCT GGCGCAGAGC CTGTACGAGC GCCACAAGGC GCTGACCTAT
CCGCGGACCG ACTCGCGCGC ACTGCCCGAG GACTACCTGC CGGTGGTCAA GGACACCATG
AAGATGCTCG CCGAGAGCGG CATGAAGCAC TTGGCGCCCT TCGCGCAGCA GGCGGTCGAC
GGCAGCTACG TGAAGCCGAA CAAGCGCATC TTCGACAACG CCAAGGTGTC GGATCACTTC
GCGATCATTC CCACGCTGCA GGCGCCGAGC GGCCTGTCCG ACGCCGAGCA GAAGCTCTAC
GACTTCGTGG TGCGCCGCTT CATGTCGGTG TTCTTCCCGA GCGCCGAGTT CCAGGTGACC
ACCCGGATCA GCACGGTGGA GGCCGGCGGC AAGAAGTACC CGTTCCGCAG CGACGGCAAG
GTGCTGGTCA AGCCGGGCTG GCTCGCGATC TGGGGCAAGG AAGCCATCAG CGACGACGAC
GAGAAGGACG GCAAGAACCT GGTGGTGGTG AAGCCGGGCG AAACGGTGAA GACCGAATCG
GCCGACCTGA AGGCGCTGAA GACCCGGCCG CCCGCGCGCT ATTCGGAAGC CACGCTGCTG
GGCGCGATGG AAGGCGCCGG CAAGACCATC GACGACGACG AGCTGCGCGA GGCCATGCAG
GAAAAAGGCC TGGGCACGCC AGCCACGCGC GCGGCCACCA TCGAAGGCCT GATCACCGAG
AAATACATGC TGCGCGAAGG CCGCGAGCTG ATCCCCACGG CCAAGGCCTT CCAGCTCATG
ACGCTGCTGC GCGGCCTGGG CGTGGAAGAA CTCTCCAAGG CCGAGCTCAC GGGCGAGTGG
GAATACAAGC TCGCGCAGAT GGAGAAGGGC GCGCTGAGCC GCGACGCCTT CATGCGCGAG
ATCGCCGAGA TGACGCAGCA CATCGTCAAG AAGGCCAAGG AATACGACCG CGACACCGTG
CCGGGCGACT ACGCCACGCT GTCGACCCCA TGCCCCAACT GCGGCGGCGT GGTGAAGGAA
AACTACCGCC GCTACAGCTG CACCGGCAAG GCCGGGCAGG AGCCCTGCGG CTTCTCGTTC
GGCAAGTCGC CGGCGGGGCG CACCTTCGAG GTGGCCGAGG CGGAAGTGCT GCTGCGCGAC
AAGCACATCG GCCCGCTGGA GGGCTTCCGC TCCAAGGCGG GCTGGCCCTT CACGTCCGAG
ATCGTCCTCA AGTACGACGA AGAGGCGAAG AACTGGAAGC TGGAATTCGA CTTCGGCGAC
GACAAGAACG CCGACACCGG CGAGATCGTC GATTTCAGCG AGCAGGACAC GGTGGGCCCG
TGCCCGATCT GCGGCGCGCC GGTGTTCGAG CACGGCAGCA ACTACGTCTG CGAGAAGTCG
GTGCCCACCA CTGCGCAGCC GACGCCCAGC TGCACCTTCA AGACCGGCAA GATCATCCTG
CAGCAGCCGG TGGAGCGCGC GCAGATGGAA AAGCTGCTGG CCACGGGCAA GACCGACCTG
CTCGACAAGT TCGTGAGCAT GCGTACGCGC CGCGCCTTCA AGGCCTTCCT GACCTGGAAC
GCCGAGGAGG GCAAGGTGAC CTTCGAATTC GCGCCGCGCG AAGGCGGCAG CAAGTTCCCG
CCGCGCAAGA CCTTCGGCAA GGCCGCGCCG GCGGGCAAGA CCGCGGCGGC CAAGAAGGTG
GCGGCCAAGA AGACGCCCGC CGCCAAGAAG GCACCGGCCG CGAAGAAGGC TGCCGCGCCG
CGCAAGCCGG GCGCGGGCCT CAAGCCCAGC GACTCGCTGG CCGCGGTGAT CGGCGCCGAG
CCGGTGGCGC GCACCGAGGT CATCAAGAAG CTCTGGGACT ACATCAAGGC CAACGGCCTG
CAGGACGCGG CCAACAAGCG CGCGATCAAT GCCGACGCCA AGCTCAAGCC GGTGTTCGGC
AAAGACCAGG TGACGATGTT CGAGCTCGCG GGCATCGTGG GCAAGCACCT GTCGGCGCCA
TGA
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| Protein sequence | MKTLVIAEKP SVAQDIVRAL TPVAGKFDKH DEHFENDSYV VTSAVGHLVE IQAPEEFDVK
RGKWSFANLP VIPPHFDLKP VDKTKTRLNA VVKQAKRKDV TQLINACDAG REGELIFRLI
EQYAGGKTGL NKPVKRLWLQ SMTPQAIRDG FDALRTEKQM QGLADAARSR SEADWLVGIN
GTRAMTAFNS RDGGFFLTTV GRVQTPTLSV VVEREEKIRK FVSRDYWEIH GVFQAEAGQY
PGKWFDANFK KPPPGPDGTA DAEIRADRVW SEREAREIAD AARGKPASVT EESKPTTQAS
PMLFDLTSLQ REANGRFGFS AKTTLALAQS LYERHKALTY PRTDSRALPE DYLPVVKDTM
KMLAESGMKH LAPFAQQAVD GSYVKPNKRI FDNAKVSDHF AIIPTLQAPS GLSDAEQKLY
DFVVRRFMSV FFPSAEFQVT TRISTVEAGG KKYPFRSDGK VLVKPGWLAI WGKEAISDDD
EKDGKNLVVV KPGETVKTES ADLKALKTRP PARYSEATLL GAMEGAGKTI DDDELREAMQ
EKGLGTPATR AATIEGLITE KYMLREGREL IPTAKAFQLM TLLRGLGVEE LSKAELTGEW
EYKLAQMEKG ALSRDAFMRE IAEMTQHIVK KAKEYDRDTV PGDYATLSTP CPNCGGVVKE
NYRRYSCTGK AGQEPCGFSF GKSPAGRTFE VAEAEVLLRD KHIGPLEGFR SKAGWPFTSE
IVLKYDEEAK NWKLEFDFGD DKNADTGEIV DFSEQDTVGP CPICGAPVFE HGSNYVCEKS
VPTTAQPTPS CTFKTGKIIL QQPVERAQME KLLATGKTDL LDKFVSMRTR RAFKAFLTWN
AEEGKVTFEF APREGGSKFP PRKTFGKAAP AGKTAAAKKV AAKKTPAAKK APAAKKAAAP
RKPGAGLKPS DSLAAVIGAE PVARTEVIKK LWDYIKANGL QDAANKRAIN ADAKLKPVFG
KDQVTMFELA GIVGKHLSAP
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