| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5187 |
|---|
| Symbol | |
|---|
| ID | 7969846 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 5509565 |
|---|
| End bp | 5511841 |
|---|
| Gene Length | 2277 bp |
|---|
| Protein Length | 758 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644795781 |
|---|
| Product | adenylate/guanylate cyclase with Chase sensor |
|---|
| Protein accession | YP_002947055 |
|---|
| Protein GI | 239818145 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4252] Predicted transmembrane sensor domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCGCGC TCAGGCGCCA CTGGCCGCGC ATTGCCATCA CCCTGCTGCC GGTTTTGCTC
GCGCTCGCGC ATGCCACCGG CCTCTGGCGC CTGGATGCCA TCGACCGGCT CGACCACCTG
ATCTACGACA CGCGCCTGCG CGCCACCATG CCGGGCACGC TCGATCCGCG CATCGTGATC
GTCGACGTCG ACGACGCCAG CCTCACCCGG CAGGGCCAAT GGCCCTGGTC GCGCGACAAG
CTGGCCCGGC TCACCCGGGA GCTCACCGGG CGGCAGCAGG CGGCGGCGCT GGGCTTCGAC
GTGATGTTCG TCGAGCCCGA CCGCAGCTCC GGCCTCGACA AGCTGCGCCA GATCGCACGC
GGCCCGCTGC GCGAAATGCC GGGCTTGGCC GCTGAAATCG ACCGGCTCGC CCCCACGCTC
GACAACGACG CCATCTTTGC CGCCGCCATG CAAGGCCAGC GCGTGGCGCT CGGCTACTAC
TTCACGCGCA CCGAAAAGCC CGGCGCCAAG GGCCGGCTGC CGCCGGCCCC CGTGCTGCAG
GCCGAGGCCT TTCCGCCGGG CCGCGGCTAT GCCACCGCCT GGAACGGCTT TGGCGCCAGC
CTGCCGGTGC TGGCCGATGC CGCGCCGGCG GCGGGCTTTC TCAACACGCT GGTCATGTCC
AACGGCGACG GCGTCATCCG CGCCGTGCCG CTCATCGCCC GCTACGAGGG CGACCGCGCC
CGGCCCGGCT ACTACGAATC GCTGGGCCTG GCCGTCTACC GGCTTGCCAG CGGCTCGCCG
CCCGTGCGGC CGGCCTTTGC ACCCGGCGGA TCCGGCGGCG CCGCGCCGCC GCTCCAGTCC
CTGCTGGTCG GCGGCCTGCG CATCCCCGTC AACGAAGCCG CTTCCATGCA GGTGCCGTTC
CGCGGCCCCG GCGGCGCGCA CGGCGGATCG TTCCGCTACG TGTCGGCCGG CGACGTGCTC
GAAGGGCGGC TTGCGCCTGG CGAGCTGAAG GACCGCATCG TGCTCGTCGG CGCCACCGCG
CCGGGCCTGC AGGACCTGCG CGCCACCCCC GTCGGCGCCG CCTTCCCCGG CGTCGAAGTG
CATGCCAATA TCGTCTCGGC CATGCTCGAC CACCGCCTGC TCGCGGTGCC CGACTACGCC
CCGGGTTATG AAGTGCTCAG CGTGCTGGCC GCGGGGCTCG TGCTGGCGCT GGGCCTGTCG
CTGCTGCCCG CCCCGCGCGC GGTGGTGCTG GCCATTGCCA CCCTCGCGGC GCTGGTCGGC
GTCAATGCCT GGCTCTACCA GCGCCACAGC CTCGTGCTGC CGCTTGCCTC CGCGCTGACC
ATGGCGGTGC TCGCCTTTGC CTTCAACATG GGCTGGGGCT ACTTCATCGA GTCGCGCGCG
CGCCGCGGGC TGGTGCGGCT CTTCGGCACC TACGTGCCGC CGCAGCTCGT CAAGGAAATG
CTCGTCACCC CCGGCCGCTA CAGCATGCGC GCCGAGAGCA AGCACATGAC CGTCATGTTC
TGCGACATGC GCAACTTCAC CCGCCTGTCG GAGCAGATGG CTCCGGCCGA ACTGCAGGCC
TTCCTGAACA ACGTGTTCAA CCGGCTCACC AGCGTCATCA GCACCCACCG CGGCACCGTC
GACAAATACA TGGGCGACTG CGTCATGGCC TTCTGGGGCG CCCCCATCGA CACCCCCGAG
CACGCCACCC TGGCCGTGCG CGCCGCGCTC GACATGGCCG AGGCCGTGCG CGACATCAAC
AACATCCACC GCAGCACCGG CCGGCCCGAG ATCAGCGTGG GCATCGGCAT CAACAGCGGC
GTCATGAGCG TGGGCGACAT GGGCTCGGCC GCGCGGCGCA GCTGCACCGT GGTGGGCGAT
GCGGTCAACC TCGCCTCCCG CCTCGAAGGC CTGAGCGTGC ACTACGGCGT GGAAATCGTC
GCCAGCGGCG CGACGCGCGA ACTCGCGCCC GGCTTCGTCT GGCAGGAGCT CGACAGCGTG
CTCGTCAAGG GCCGGGCCCA GGCCGTGGCC GTGTTCACGC CGCTCAGCGC CACCACGCAG
GCAGAGGCCC AGACCCCTGC CGCACTGCAG CAATCCGCCC AGCTGCAGCG CTGGGCCGAA
GTGCTGGCCG CCTACCGCCG CCAGGACTGG GCCATGGGCC GCAACTTGCT GGATCCACTG
CTGGCCGCGG ATGCCAAAAA AGTCCTTTAC CAGCTCTACG CACAACGATT AGCCTCCATG
GCGTTGCGGC CCCAAGACCC CGAATGGGAC GGCGCAACCC GCTTCGAAAC CAAATGA
|
|---|
| Protein sequence | MTALRRHWPR IAITLLPVLL ALAHATGLWR LDAIDRLDHL IYDTRLRATM PGTLDPRIVI
VDVDDASLTR QGQWPWSRDK LARLTRELTG RQQAAALGFD VMFVEPDRSS GLDKLRQIAR
GPLREMPGLA AEIDRLAPTL DNDAIFAAAM QGQRVALGYY FTRTEKPGAK GRLPPAPVLQ
AEAFPPGRGY ATAWNGFGAS LPVLADAAPA AGFLNTLVMS NGDGVIRAVP LIARYEGDRA
RPGYYESLGL AVYRLASGSP PVRPAFAPGG SGGAAPPLQS LLVGGLRIPV NEAASMQVPF
RGPGGAHGGS FRYVSAGDVL EGRLAPGELK DRIVLVGATA PGLQDLRATP VGAAFPGVEV
HANIVSAMLD HRLLAVPDYA PGYEVLSVLA AGLVLALGLS LLPAPRAVVL AIATLAALVG
VNAWLYQRHS LVLPLASALT MAVLAFAFNM GWGYFIESRA RRGLVRLFGT YVPPQLVKEM
LVTPGRYSMR AESKHMTVMF CDMRNFTRLS EQMAPAELQA FLNNVFNRLT SVISTHRGTV
DKYMGDCVMA FWGAPIDTPE HATLAVRAAL DMAEAVRDIN NIHRSTGRPE ISVGIGINSG
VMSVGDMGSA ARRSCTVVGD AVNLASRLEG LSVHYGVEIV ASGATRELAP GFVWQELDSV
LVKGRAQAVA VFTPLSATTQ AEAQTPAALQ QSAQLQRWAE VLAAYRRQDW AMGRNLLDPL
LAADAKKVLY QLYAQRLASM ALRPQDPEWD GATRFETK
|
|---|
| |