| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5180 |
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| Symbol | |
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| ID | 7969839 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5504045 |
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| End bp | 5504554 |
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| Gene Length | 510 bp |
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| Protein Length | 169 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644795774 |
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| Product | fimbrial protein pilin |
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| Protein accession | YP_002947048 |
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| Protein GI | 239818138 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4968] Tfp pilus assembly protein PilE |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0088813 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATCCGC CCATCACTGC CATGAAACGC CAATACTCCG ATTCACGCCG ATCCGGCCGT
GGCTTCACGC TGATCGAAGT CATGATCGTG GTTGCCATCA TCGCCATCCT GTCGATGATT
GCCATGCCCA GCTACCAGGA GCATGTGCGC CGTTCAAAAC GCGCGGAAGC CGAGGGCGTC
CTGATGGAAG CCGCTCAGTT CATGCAGCGC TACTACTCGG CCAACGACCG CTACACGGCC
AGCGCTGGCA CGGTCACCAC GGAGGCCGAG CAGAAAGTCA GCGGTGTGAG CATGCTGCCT
GAGAGCCTTC GCCAGTCGCC CAAATCGGGC GCCGCCAACT ACACCATCGC CGTTTTCGCG
CGCGACACCC CGCCCAGCTA CACCATCAAG GCCACCCGCG CCGGCAGCAT GACCGGCGAC
AAGTGCGGCA CGCTTGTTCT GAGCGGCCAA GGCGTCAAAG GCATGGAAAG CGCGACCACA
AGCCTAACCG CCGCGGATTG CTGGAAGTAG
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| Protein sequence | MHPPITAMKR QYSDSRRSGR GFTLIEVMIV VAIIAILSMI AMPSYQEHVR RSKRAEAEGV
LMEAAQFMQR YYSANDRYTA SAGTVTTEAE QKVSGVSMLP ESLRQSPKSG AANYTIAVFA
RDTPPSYTIK ATRAGSMTGD KCGTLVLSGQ GVKGMESATT SLTAADCWK
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