| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5169 |
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| Symbol | |
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| ID | 7969828 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5490401 |
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| End bp | 5492572 |
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| Gene Length | 2172 bp |
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| Protein Length | 723 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644795763 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_002947037 |
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| Protein GI | 239818127 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4772] Outer membrane receptor for Fe3+-dicitrate |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTTCAAGC AAAAGAAGTG CGCCGCACTG GTCATGGCGC TGTTCCCCAT CAGCTTCCAG
AGCCTGGCGG CCGAAGCCGA GCCGGCCGGT GCCGCATCCG GCGCGAAATC GCTGGAGGCG
GTGACCGTCA CCGGCGACTG GCTCGGCACG CCCAGCGAGA CCAAGGTGCT CGAGCACCCG
GGCGCGCGCA GCATCATCGA GCGCACGCAG ATCCAGGAAA GCGGCGCCAC CAGCGTGCGC
GAGGCGCTGC GCCAGGTTCC CGGCGTGCAG GTGCAGGAGA GCAACGGCAC GGGCGGCAGC
GACATCTCGC TCAACGTGGG CGTGCGCGGC CTCACCTCGC GGCTGTCGCC GCGCTCGACC
ATCCTGCTGG ACGGCGTGCC GCTGGCCTAT GCACCCTACG GCCAGCCGCA GCTGTCGCTG
GCGCCGCTGT CGCTCGGCAG CCTGGAAGCG GTCGACGTGG TGCGCGGCGC GGGCTCGGTG
CGCTACGGCC CGCAGAACGT GGGCGGCATC ATCAACTTCG TGACGCGCTC GATTCCCAAG
CAGTTCGCGG GCGAAGTGAG CGTGGGCGTG GAAGGCGCGG GCCACGGCGG CGGCACCAAG
ACCACGCCCA GCCTGTTCGT GGGCGGCACC AACGAGAACG GCCTGGGCCT GGCGCTGCTG
TATTCGGGCA CGCACGGCGA CGGCTTTCGC CGGAGCAACG ACCACACCAG CATCGACGAC
CTGATGCTCA AGGGCGCCTA CCGCCTGTCG AAGACCGACG ACATCGCGGT GACGCTGCAT
CACTTCGAGG GCAAGGGCCG CATGCCGGGC GGGCTGACCA CCGCGCAGTT CGCGGCCGAC
CCGTTCCAGT CGGACCGTCC GTTCGACGAA TTCACGGGAC GCCGTACCGA CGGCTCGGTC
AAGTACACGC ACGACGACGG CGTGAACAAG TTCGAGATGC TGAGCTACTA CACGGACTCC
TACCGCAGCA GCTACCTCGA GCAGGAAGGC ACCGGTGCCA ACACGGGCCG GCGGCGCCTG
ACCTCCGCGC CGCGCAACTA CAAGACCTAC GCCTTCGAGC CCCGCTACTC GCGCCTGATC
GACTCGGGCA GCGTGGTGCA GGAGATCAGC GTCGGCGCGC GCTACCTCAA GGAAGAGGCC
TCCGAGGTGG CGACGCGCAG CGGCTACTAC CCGCCGCGCC CGGGCTTCGA TGCCTACGCG
CTCGCCCAGC CGGCTTACCA GTCGAGCAAG GGCGGCACCA CCGCCCATGC GGTCTACATC
GACGACCGCA TCGACTTCGG CAACTGGACG GTCACGCCCG GCGTGCGCTA CGAATCGATC
CGCTCGCACA ACGACGTCTT CACGCTGGCC AACGGCCGGG TCACCGGCGC GAACTATCCG
AAGATCGACT CCAACGAAGT GCTGCCGACG CTGTCGGTGC TCTACCGCAT GAACGAGCGC
TGGTCGGTGT TCGCGAACGC CGGCGTGTCG TTCGGGCCGC AGCAGTATGC GCAGCTCGCG
CAGTCCACCA GCGGCCTGCA CCCCGAGAAG GCCAAGACGT ACGAGATCGG CACGCACTAC
AAGGGCGAGG CCTGGAGCGG CGAGCTCACG CTGTTCAACA TCAACTTCGA CAAGGAACTG
CTGCTGGCCC GCTCCATCAC CGGCGACGTC GGCCAGTGGA CCGACCTGGG CGCCACGCGG
CACCGCGGCC TGGAGTCGGC GCTGCGCTAC CAGCTCGGCA GCCTGAGCGA TTCGCTCAAG
GGCCTGTCGG TGTCGGCCAC CTACACCTAC ACGCAGGCGA TTGCCAAGGC CGGGGCCTTT
GCCGGCCGCG ACCTGCCCTT CTACTCGCGC CAGGTGGCCA CGCTCGGCGC GCGCTACGAG
CGCGGGCCCT GGACCTTCAA TGCCGACGTG TACGCGCAGT CGAAGCAGCG CTCGCCGGGC
TCGCCAGACG ACGGCGCGCA GTACATCACG CTGGAAGACC CGAACGGCCG GCTCGGCAAC
ATTCCGGGCT ACGCCACCAT GAACCTGCGC GCGGCGTACG ACTTCGGCCC CTCGATGAGC
AACCTGAAGC TCGCCGTCGG CATCAAGAAC CTGTTCGACC GCCGCTACTA CAACCGCTCG
GTCGACAACA ACGGCGGCAA GTACGTGGGC CAGCCGCGCA CGGTGTACCT GCAGGCCTCG
GTGGCGTTCT GA
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| Protein sequence | MFKQKKCAAL VMALFPISFQ SLAAEAEPAG AASGAKSLEA VTVTGDWLGT PSETKVLEHP
GARSIIERTQ IQESGATSVR EALRQVPGVQ VQESNGTGGS DISLNVGVRG LTSRLSPRST
ILLDGVPLAY APYGQPQLSL APLSLGSLEA VDVVRGAGSV RYGPQNVGGI INFVTRSIPK
QFAGEVSVGV EGAGHGGGTK TTPSLFVGGT NENGLGLALL YSGTHGDGFR RSNDHTSIDD
LMLKGAYRLS KTDDIAVTLH HFEGKGRMPG GLTTAQFAAD PFQSDRPFDE FTGRRTDGSV
KYTHDDGVNK FEMLSYYTDS YRSSYLEQEG TGANTGRRRL TSAPRNYKTY AFEPRYSRLI
DSGSVVQEIS VGARYLKEEA SEVATRSGYY PPRPGFDAYA LAQPAYQSSK GGTTAHAVYI
DDRIDFGNWT VTPGVRYESI RSHNDVFTLA NGRVTGANYP KIDSNEVLPT LSVLYRMNER
WSVFANAGVS FGPQQYAQLA QSTSGLHPEK AKTYEIGTHY KGEAWSGELT LFNINFDKEL
LLARSITGDV GQWTDLGATR HRGLESALRY QLGSLSDSLK GLSVSATYTY TQAIAKAGAF
AGRDLPFYSR QVATLGARYE RGPWTFNADV YAQSKQRSPG SPDDGAQYIT LEDPNGRLGN
IPGYATMNLR AAYDFGPSMS NLKLAVGIKN LFDRRYYNRS VDNNGGKYVG QPRTVYLQAS
VAF
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