| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5148 |
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| Symbol | |
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| ID | 7971519 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5462544 |
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| End bp | 5463320 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 644795742 |
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| Product | GntR domain protein |
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| Protein accession | YP_002947016 |
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| Protein GI | 239818106 |
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| COG category | [K] Transcription |
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| COG ID | [COG2186] Transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.178203 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGCCC GCTTCCAATC CATCGCTCCC GGTGCCCGCC TCGCCGACCA GGTGGCCGAC
GCCTTGGCCG CCGAAGTGCG CAGCGGTCGC CTGTCCGAGG GCGACCGCCT GCCGACCGAG
AGCGCGCTGG CCGAGCAGTT CGGCGTGAGC CGCACGGTGG TGCGCGAGGC GGTGTCGCGG
CTCAAGTCGC TGGGGCTGCT CGATTCGCGC CAGGGCAGCG GCGTGTACGT GCGTGCCGCG
GGCGTGGAGC CGCTGCGCTT CGAGATGCCG CACGTGGCCT CGCGCGAAGC GGTGATCCAG
ATGGTCGAGC TGCGCCGCGC GCTCGAGGCC GAGGTGGCCG CGCTCGCAGC CGAGCGCCGC
ACCCCTGAAG ACGTGCAGCA CATCCGCGAT GCCATCGACG CGCTGCATGC GGCCGTGGCC
GCGGGCGGCA ACGGCGCCGA GGAAGACGTG CGCTTTCACC GCGCCATTGC CGAGGCCGCG
CGCAATCCGT TCCTGGTCGG CACGCTGCAG TACCTGCGGC AGTTCCTGCA CGGCGCCACG
CGCGTCACAC GCGCCAACGA GGCGCGCCGC GCCGACTTCG CGCGCGAGGT GGCGCAGGAG
CATGCGCGCA TCGTCGAGGC CATCGAGGCC GGCGATGCGC TGCGGGCGCG CGAGGCGGCC
AAGTCCCACA TGGACAACGC GATCCGCCGC ATCGAGCAGG CCGACCCCGC CTTCTGGCAG
CAGGAGGGCG CGCAGCTCGC GCGGCCGCTG GTCGAAGGCT GGCCGCTCGG CAGCTGA
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| Protein sequence | MTARFQSIAP GARLADQVAD ALAAEVRSGR LSEGDRLPTE SALAEQFGVS RTVVREAVSR
LKSLGLLDSR QGSGVYVRAA GVEPLRFEMP HVASREAVIQ MVELRRALEA EVAALAAERR
TPEDVQHIRD AIDALHAAVA AGGNGAEEDV RFHRAIAEAA RNPFLVGTLQ YLRQFLHGAT
RVTRANEARR ADFAREVAQE HARIVEAIEA GDALRAREAA KSHMDNAIRR IEQADPAFWQ
QEGAQLARPL VEGWPLGS
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