Gene Vapar_5130 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5130 
Symbol 
ID7971501 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp5444722 
End bp5445876 
Gene Length1155 bp 
Protein Length384 aa 
Translation table11 
GC content69% 
IMG OID644795724 
Productcytochrome c oxidase subunit II 
Protein accessionYP_002946998 
Protein GI239818088 
COG category[C] Energy production and conversion 
COG ID[COG1622] Heme/copper-type cytochrome/quinol oxidases, subunit 2 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCATGG CCGTCGCCCT GCTGCTCATC GTGCTCGGCT CGGTGCTGTT CCACGTCTTC 
AATCCGTGGT GGACGACGCC CCTTGCGTCG AACTGGCAGC CGATGGACGA CACCCTGTCC
ATCACGCTGC TGATCACGGG GATCTTCTTC ATTGCCATCA ACGTGTTCGT CGCCTACATG
CTGGTGCGCT TTCGCCACCG CGAGGGACGC CGCGCGGCGC ATGAGCCCGA GAACAGGAAG
CTCGAGCGCT GGCTGATCGG CGGCACCACC GCCGGCATCA TGGCGCTGCT GGCGCCCGGC
CTCGTGGTGT ACGCGAACTA CGTCAGGGAG CCCCGCGACG CCCTCGTGCT CGAGGTGCTG
GGCCAGCAAT GGCAATGGCG CTTCCGCTTC CCGGGCGAGG ACGGCAAGCT GGGCGCGACC
GATGCGCGCT TTGTCAGCGC CACCAATCCG TTCGGCATCG ACCCCGCCGA CCGCGCCGGG
CAGGACGACC TCCTGACCGC CGGCAACGAG GTGCACCTGC CGCTCGGCAA GCCGGTGCTG
GTGCTGATGC GTTCGAACGA CGTGCTGCAC GACTTCTTCG TGCCGAACTT CCGCGCCCGG
ATGAACATGG TGCCGGGACA GGTCAGCCGC TTCTGGTTCA CGCCGGCCGT CGCGGGCCGC
TACGAAGCGC TGTGCGCGCA GCTGTGCGGC GTGGGCCATC CCAACATGCG CGGCTACGTG
GTGGTGGAAG ACCCGGCGGC CTACCAGGCC TGGCACGCGG CGCTGCCGAC CTTCGCCAGG
TCGCAGGCCA AGGCGCCCGA GCCCCCGGCC GGCGCCGCCG GCGGCGATGC ACGCGTCCAG
CAGGGGCGCG CGCTGGCGGA CAGCAAGGGC TGCGTGGCCT GCCACACGGT CGACGGCAGC
GCGCGCGTGG GGCCGACCTG GAAGGGCCTG CACGGCAAGA CCGAAACCAT GGCGGACGGC
AGCACCGCGC TGGTCGACGA AGCCTATCTG CGCAGCTTCA TCCGCGATCC GCAGGCCCGC
CAGGTGAAGG GCTTCCCGCC GGTCATGCCG AAGATCGAGT TGAGCGATGA AGAACTGGCC
GCGCTGGTGG CCTATATCCA GAGTCTGGGC AGCCCGCCGG CGCAGGCTGC CGCCGAACAG
AAGGCTGCGC GATGA
 
Protein sequence
MTMAVALLLI VLGSVLFHVF NPWWTTPLAS NWQPMDDTLS ITLLITGIFF IAINVFVAYM 
LVRFRHREGR RAAHEPENRK LERWLIGGTT AGIMALLAPG LVVYANYVRE PRDALVLEVL
GQQWQWRFRF PGEDGKLGAT DARFVSATNP FGIDPADRAG QDDLLTAGNE VHLPLGKPVL
VLMRSNDVLH DFFVPNFRAR MNMVPGQVSR FWFTPAVAGR YEALCAQLCG VGHPNMRGYV
VVEDPAAYQA WHAALPTFAR SQAKAPEPPA GAAGGDARVQ QGRALADSKG CVACHTVDGS
ARVGPTWKGL HGKTETMADG STALVDEAYL RSFIRDPQAR QVKGFPPVMP KIELSDEELA
ALVAYIQSLG SPPAQAAAEQ KAAR