| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5113 |
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| Symbol | |
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| ID | 7971484 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5423875 |
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| End bp | 5424396 |
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| Gene Length | 522 bp |
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| Protein Length | 173 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644795707 |
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| Product | peptide deformylase |
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| Protein accession | YP_002946981 |
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| Protein GI | 239818071 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0220791 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCAAAC GAATCATTCT GAGTTACCCG GACAAGCGCC TGCACACGGT TGCCAAGCCC
GTGCAGGGCG TCGACGCGCG CATCAAGGCC CTGGTGGCCG ACATGCTCGA GACCATGTAC
GACGCCAGCG GCATCGGCCT GGCCGCGACC CAGGTCGACG TGCACGAGCG GCTGGTCGTC
ATCGACGTGT CCGAGGAGCG CAACGAGCCG CTGGTGCTCA TCAACCCCGA AATTATCTGG
GCAAGCGACG AAAAGGTGTT GAACGAGGAG GGCTGCCTCT CGGTGCCGGG CATCTACGAC
GGCGTCATGC GTTCCACCTC GGTCAAGGTC CAGGCGCTGG ACGAGAACGG CGAGCTGCGC
ACGATCGAGG CCGAAGGCCT CCTGGCCGTG TGCATCCAGC ACGAGCTCGA CCACCTGCTG
GGCAAGGTGT TCGTCGAATA CCTGTCGCCG CTCAAGCGCA ACCGCATCAA GAGCAAGCTG
CTCAAGCAGC AGCGCGAAGA GGCCAAAGAG GGCCGGGCGT GA
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| Protein sequence | MAKRIILSYP DKRLHTVAKP VQGVDARIKA LVADMLETMY DASGIGLAAT QVDVHERLVV
IDVSEERNEP LVLINPEIIW ASDEKVLNEE GCLSVPGIYD GVMRSTSVKV QALDENGELR
TIEAEGLLAV CIQHELDHLL GKVFVEYLSP LKRNRIKSKL LKQQREEAKE GRA
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