| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5062 |
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| Symbol | |
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| ID | 7974181 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5376127 |
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| End bp | 5376984 |
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| Gene Length | 858 bp |
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| Protein Length | 285 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644795656 |
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| Product | pyrroline-5-carboxylate reductase |
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| Protein accession | YP_002946930 |
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| Protein GI | 239818020 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0345] Pyrroline-5-carboxylate reductase |
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| TIGRFAM ID | [TIGR00112] pyrroline-5-carboxylate reductase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.25166 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCATCG CCGTCACCTT CCTGCCCCGC ACCGCACCGC CGCCGCTGCC TCCGATCGCC
TTCATCGGCG GCGGCAACAT GGCCAGCGCC ATCATCGGCG GCCTCATCAA GCAGGGTACG
CCCGCCGGCA GCTTCGAGGT GGTCGAGCCC TTCGAGGAGG CCCGCACCAA GCTCGCGCAA
TCCTTCGGCA TTGCCGCTCA CGCCGAGGCC GGCGACGCCC TTTCGCGCTG CTCGGTGGTG
GTGTGGGCGG TCAAGCCGCA GACTTTTGCG GACGCGGCCG TCCCGGTGCG CGCATTCGCG
GCCAACGCAC TGCACCTGAG CGTGGCGGCC GGCATTCCGT CGGGCAGCAT TGCGCGCTGG
CTCGGCAGCG AACGCGTGGT GCGCGCCATG CCCAACACGC CGGCGCTGGT GGGCCAGGGC
ATGACCGGCC TTTTTGCGCG GACCGCGGTG GAGGCCGCCG ACCGCTCCCT GGTCGGGCAG
CTGCTGGCGC CGACCGGCGA GCTGCTCTGG GTCGACGACG AAGCCGCGCT CGATGCGGTG
ACGGCCATGT CGGGCTCCGG CCCGGCCTAC GTCTTCTATT TCATCGAAGC GATGACCGAA
GCCGGCGTCG AGATGGGCCT GCCGCTCGAG CAGGCCCAGC GGCTGGCCAT CGGCACCTTC
ACCGGCGCTT CGGCACTGGC GCACAGCGCC ACCGAGCCGC CGTCGGTGCT GCGCGAACGC
GTGACCTCCA AGGGCGGCAC CACCCACGCG GCAATCAGCG CGCTCGAGGG CGCCGACGTC
AAGGCGAAGT TCAAGGCCGC CATCCGTGCG GCGCAGAAGC GCGCCGCCGA GCTGGGCGAC
GAATTCGGCC GCGCCTGA
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| Protein sequence | MTIAVTFLPR TAPPPLPPIA FIGGGNMASA IIGGLIKQGT PAGSFEVVEP FEEARTKLAQ
SFGIAAHAEA GDALSRCSVV VWAVKPQTFA DAAVPVRAFA ANALHLSVAA GIPSGSIARW
LGSERVVRAM PNTPALVGQG MTGLFARTAV EAADRSLVGQ LLAPTGELLW VDDEAALDAV
TAMSGSGPAY VFYFIEAMTE AGVEMGLPLE QAQRLAIGTF TGASALAHSA TEPPSVLRER
VTSKGGTTHA AISALEGADV KAKFKAAIRA AQKRAAELGD EFGRA
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