| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5050 |
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| Symbol | secY |
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| ID | 7974169 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5369261 |
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| End bp | 5370574 |
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| Gene Length | 1314 bp |
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| Protein Length | 437 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644795644 |
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| Product | preprotein translocase subunit SecY |
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| Protein accession | YP_002946918 |
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| Protein GI | 239818008 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0201] Preprotein translocase subunit SecY |
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| TIGRFAM ID | [TIGR00967] preprotein translocase, SecY subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.34117 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCAACTA ACGCGGCAAC GATCGCAAAG ACAGGCAAGT TCGGCGACCT GCGTCGCCGG
CTCGTCTTCT TGCTGCTCGC GCTCGTGGTC TATCGGATCG GCGCGCACAT TCCTGTGCCG
GGCATCAACC CGGACCAGCT GGCGGCGTTG TTCCAGGGCC AGCAGGGCGG CATCCTGAGC
CTGTTCAACA TGTTCTCGGG CGGGGCGCTC TCGCGCTTCA CCGTGTTCGC GTTGGGGATC
ATGCCGTACA TCTCGGCGTC GATCATCATG CAGTTGATGA CCTACGTGCT TCCGACCTTC
GAGCAATTGA AGAAGGAAGG CGAGGCCGGC CGCCGCAAGA TCACGCAGTA CACGCGCTAT
GGCGCGCTCG GCCTGGCCCT GTTCCAGTCG TTCAGCATTG CAGTGGCGCT CGAGTCTTCG
GCCGGCCTGG TCATCTCGCC CGGTTTCGGC TTCCGCCTGA CCGCCATGGT GAGCCTCACG
GCAGGTTCGA TGTTCCTGAT GTGGCTCGGC GAGCAGATCA CCGAACGGGG CCTGGGCAAC
GGCATCTCGA TCCTGATCTT TGCAGGTATC GCGGCCGGTC TGCCCAATGC CATCGGCGGC
CTCGCTTCGC TGGTGACCAC CGGTGCGATG AATCCGATCA TTGCGCTCTT CATCATCGCG
ATCGTGGTGC TGGTCACCTA CTTCGTGGTG TTCGTCGAAC GCGGCCAGCG CAAGATCCTC
GTGAACTATG CGCGGCGCCA GGTCGGCAAC AAGGTCTATG GCGGCCAGTC GTCGCACCTG
CCCTTGAAGC TGAACATGGC CGGTGTGATT CCGCCGATCT TCGCCTCCTC GATCATCCTG
CTGCCCGCAA CGGTGGTCGG CTGGTTCAGC ACCGGCGAAG GTGGTTTCGG CTGGATCAAG
GACGTGGCCG GCGCACTGCG TCCGGGCGAG CCGATCTACG TGCTGCTGTA CGCTGCCGCG
ATCGTTTTCT TCTGCTTCTT CTACACGGCA CTCGTGTTCA ACAGCAAGGA AACGGCCGAC
AACCTGAAGA AGAGCGGTGC ATTCATTCCG GGCATCCGTC CGGGTGACCA GACCGCTCGC
TATATCGACA AGATTCTGGT TCGCCTGACG TTGGCTGGCG CGGTGTACAT CACCTTCGTC
TGCCTGCTGC CCGAGTTCCT GATCCTGAAG TACAACGTCC CGTTCTACTT CGGTGGTACC
TCCCTGCTGA TCATCGTGGT CGTCACGATG GACTTCATGG CCCAGGTGCA AAACTACATG
ATGTCCCAGC AGTACGAATC GCTGCTGAAG AAGGCCAACT TCAAGACATC GTAG
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| Protein sequence | MATNAATIAK TGKFGDLRRR LVFLLLALVV YRIGAHIPVP GINPDQLAAL FQGQQGGILS
LFNMFSGGAL SRFTVFALGI MPYISASIIM QLMTYVLPTF EQLKKEGEAG RRKITQYTRY
GALGLALFQS FSIAVALESS AGLVISPGFG FRLTAMVSLT AGSMFLMWLG EQITERGLGN
GISILIFAGI AAGLPNAIGG LASLVTTGAM NPIIALFIIA IVVLVTYFVV FVERGQRKIL
VNYARRQVGN KVYGGQSSHL PLKLNMAGVI PPIFASSIIL LPATVVGWFS TGEGGFGWIK
DVAGALRPGE PIYVLLYAAA IVFFCFFYTA LVFNSKETAD NLKKSGAFIP GIRPGDQTAR
YIDKILVRLT LAGAVYITFV CLLPEFLILK YNVPFYFGGT SLLIIVVVTM DFMAQVQNYM
MSQQYESLLK KANFKTS
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