Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5018 |
Symbol | |
ID | 7974136 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 5333423 |
End bp | 5335516 |
Gene Length | 2094 bp |
Protein Length | 697 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644795611 |
Product | PQQ-dependent dehydrogenase, methanol/ethanol family |
Protein accession | YP_002946886 |
Protein GI | 239817976 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG4993] Glucose dehydrogenase |
TIGRFAM ID | [TIGR03075] PQQ-dependent dehydrogenase, methanol/ethanol family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.729726 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAGA TCCACTCCGG TTGGCTTGCG CTCGCCGGTG CATTGCTGTG CCTGGGCAGC TCGCCCGCCG CGGCCCAGGC CTCGGCCGCC AAGCAGGTGA ACGGCGACTT CGTTCGCGCC AATGCGGCCC AGAAGAAGAC GCCCGACTGG CCGAGCTACG GCCTGGACTA CGCCGAGTCG CGCTTCAGCA AGCTCGACCA GGTGAATGCC GGCAACGTGA AGCAGCTGGG GCTGGCCTGG TCCTACAACC TCGAATCCAC GCGCGGCGTC GAGGCCACGC CGCTGGTGGT GGACGGCGTC ATGTACGTGA CCGCGTCGTG GAGCGTGGTG CATGCCATCG ACACGCGCAC CGGGCAGAAG CTCTGGAGCT TCGATCCGCA GGTCGACAAG TCCAAGGGCT TCAGGGGCTG CTGCGACGTG GTGAACCGCG GCGTGGCGCT GCACGAGGGC AAGGTCTACG TCGGCGCCTT CGACGGCCGC CTGATCGCGC TCGACGCGGC CACGGGGCAG AAGGTCTGGG AGAAGAACAC CATCGAGGGG CAGAAGGGCA GCTACACCAT CACCGGCGCG CCGCGCGTCT TCAAGGGCAA GGTCATCATC GGCAACGGCG GCGCCGAGTA CGGCGTGCGC GGCTACGTCA CAGCCTACGA CGCGAAGACC GGCGAGCAGA AGTGGCGCTG GTTCGTGGTG CCGGGCGATC CGGCCAAGCC CTTCGAGGAC GAATCGATGG CGCGCGCCGC CAAGACCTGG GACCCTTCGG GCAAGTACTG GGAGGCCGGC GGCGGCGGCA CCGCATGGGA CAGCTTCGCC TTCGACCCCG AGCTCAACCT GATGTACGTG GGCACCGGCA ACGGCTCGCC CTGGGCGCAC AAGAAGCGCA GCCCCAAGGG CGGCGACAAC CTCTACCTCG GCTCGGTGGT GGCCCTGAAC CCCGACACCG GCAAGTACGT GTGGCACTAC CAGGAGACGC CGGGCGACAA CTGGGACTAC ACCTCCACCC AGTCGATGAT CCTGGCCAAC GTCACGCTCG GCGGCAAGGC GCGCAAGGTG CTGCTGCATG CGCCGAAGAA CGGCTTCTTC TTTGTCATCG ACCGCACCAA CGGCAAGTTC ATCTCGGCGA AGAATTTCGT CGACGTGAAC TGGGCCACGG GCTACGACAA GAACGGCCGC CCCATCGAGA TCGCGGCCGC GCGCCAGAAC GACAAGCCCG GCGACAGCAT CCCCGGCCCC TTCGGTGCGC ACAACTGGCA CCCGATGTCG TTCAACCCGC AGACCGGCCT GGCCTACTTG CCGGCGCAGA ACATCCCGAT CAACCTGATG GACGACAAGG ACTGGAAGTT CGACCAGAAC GCACCGGGCC GGCCGCACGC CGCACTCGGC TGGAACACCG CCATGTTCGC CAACGCCGAG CCGCCCAAGA GCAAGCCCTT CGGCCGCCTC GTCGCCTGGG ACCCGGTGGC GCAGAAGGAG GCCTGGGGCG TGGACTACGT CTCGCCCTGG AACGGCGGCA CGCTCACCAC CGCCGGCAAC CTGGTGTTCC AGGGCACGGC CGACGGCCGC CTGGTGGCCT ACAACGCGAA GACCGGCGAG AAGCTCTGGG AAACGGCCAC CGGCACCGGC GTGGTGGCCG CGCCCACCAC CTACATGGTC GATGGCAAGC AGTACGTGTC GGTCGCGGTG GGCTGGGGCG GCGTGTACGG CCTCGCGCAG CGCGCCACCG AGCGGCAGGG CCCGGGCACG GTCTACACCT TTGCCGTGGG CGGCAGCGCG AAGATGCCCG AGTTCGTGCA GTACCGCATG GACAAGCTGG TGCAGGGCGT GAAGTACGAC CCCGCCAAGG TCCAGGCCGG CACCATGCTC TATGTGAGCA ACTGCGTGTT CTGCCACGGC GTGCCGGGCG TGGACCGCGG CGGCAACATC CCGAACCTCG GCTACATGGA TGCGGCCTAC ATCGAGAACC TCGACAAGTT CATCCTCAAG GGCCCGGCCA TGGCGCGCGG CATGCCCGAC TTCACGGGCA AGCTCTCGGG CGAGGACATC GAGAGCATCA AGGCCTTCAT CCAGGGGACG GCCGACGCGA TCCGGCCGAA GTGA
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Protein sequence | MKKIHSGWLA LAGALLCLGS SPAAAQASAA KQVNGDFVRA NAAQKKTPDW PSYGLDYAES RFSKLDQVNA GNVKQLGLAW SYNLESTRGV EATPLVVDGV MYVTASWSVV HAIDTRTGQK LWSFDPQVDK SKGFRGCCDV VNRGVALHEG KVYVGAFDGR LIALDAATGQ KVWEKNTIEG QKGSYTITGA PRVFKGKVII GNGGAEYGVR GYVTAYDAKT GEQKWRWFVV PGDPAKPFED ESMARAAKTW DPSGKYWEAG GGGTAWDSFA FDPELNLMYV GTGNGSPWAH KKRSPKGGDN LYLGSVVALN PDTGKYVWHY QETPGDNWDY TSTQSMILAN VTLGGKARKV LLHAPKNGFF FVIDRTNGKF ISAKNFVDVN WATGYDKNGR PIEIAAARQN DKPGDSIPGP FGAHNWHPMS FNPQTGLAYL PAQNIPINLM DDKDWKFDQN APGRPHAALG WNTAMFANAE PPKSKPFGRL VAWDPVAQKE AWGVDYVSPW NGGTLTTAGN LVFQGTADGR LVAYNAKTGE KLWETATGTG VVAAPTTYMV DGKQYVSVAV GWGGVYGLAQ RATERQGPGT VYTFAVGGSA KMPEFVQYRM DKLVQGVKYD PAKVQAGTML YVSNCVFCHG VPGVDRGGNI PNLGYMDAAY IENLDKFILK GPAMARGMPD FTGKLSGEDI ESIKAFIQGT ADAIRPK
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