Gene Vapar_5006 details

Gene Information

• Locus tag: Vapar_5006
• ID: 7974124
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 5318449
• End bp: 5320404
• Gene Length: 1956 bp
• Protein Length: 651 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644795600
• Product: AMP-dependent synthetase and ligase
• Protein accession: YP_002946875
• Protein GI: 239817965
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG1022] Long-chain acyl-CoA synthetases (AMP-forming)

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.604122
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCAAACCA CCGCCCCCAC CTTTCCCCGT CTGCTGCTTG CGCATGCGCA AGCCCAGCCC 
CAGGCGCCCG CCATCCGCGA GAAGGATCTC GGCATCTGGC AAACCTGGAG CTGGAGCGCC 
GTGGCGCAGG AAGTGCGCGA AATGGCCTGC GGCCTCGCGA GCCTGGGCTT CAAGCCCTTC 
GACAACCTGT CCATCGTGGG CGCCAACCGC CCGCACCTGT ACATGGCGGT GCTCGCAGCG 
CAGAGCCTGC GCGGCGTGCC GGTGCCGCTC TACCAGGACG CGGTGGCCAG CGAGATGGTC 
TTCATGCTGC AGGACGCGGC CATCGACTTC GTGATCGTGG AGGACCAGGA ACAGGTCGAC 
AAGCTGCTCG AGTGCCGCGA GCTGCAGAAG GACCAGCAGC ACGGCATCCG CCACATCATC 
TACGACGACC CCAAGGGCCT GCGCCACTAC GACCAGCCCG GGCTCATGAG CTACGAGCAG 
CTGCGCGAAC TGGGCCGCGA ATTCGACAAG GCCCACGTCG GCTACTACGA CCGCGCGGTG 
GCCAGCGGCG AAGCCACCGA CGTCGGCGTG ATCCTCTACA CCTCGGGCAC CACCGGCCGG 
CCCAAGGGCG TGTGCCAGAC GCATGCGAGC TTCATCGCGG CGGGCCGCGG CGGCGTCGAG 
ACCGACAGGC TCGGCCCCGG CGACAACATC ATGAGCTACC TGCCGATGGC CTGGGTCGGC 
GACCACCTGT TCTCGGTGGC GCAGTGGCTG GTGGGCGGCT TCACGCTCAA TTGCCCCGAG 
TCGTCCGAGA CGGTGATGAA CGACATGCGC GAGATCGGCC CGAGCTACTA CTTCGGCCCG 
CCGCGCACCT TCGAGGGCCT GCTCACGGCC GTGTCGATCC GCATGGAAGA CGCGGCCGCG 
CCCAAGCGCT GGCTGTACGG CAAGTTCATG GCGCTCGCGC AGCGCGTGGG CGCCGACATC 
CTCAATGGCG CGCCGGTGGG CACGGGCGAC CGGCTGATGT ACGGCCTTGG CAACCTGCTG 
GTCTACGGGC CGCTGCGCAA CGTGCTGGGC ATGAGCCGCA TCCGCGTGGC CTACACGGCC 
GGCGCGGCCA TCGGGCCGGA CCTGTTCCGC TTCTACCGCT CGATCGGCGT CAACCTCAAG 
CAGTTCTACG GCCAGACCGA GACCTGCGCG TACGTGTGCC TGCAGCAGGA CGGCAAGGTC 
AAGCTGCAGA CCGTGGGCAC GGCCGCGCCG GGCATCGAAC TGAAGATCGC CGAGGACGGC 
GAAGTGCTGG TGCGCGGCGT CTCGGTGCTC AAGGAATACT ACAAGCGCCC CGACGCCACG 
GCCGAGGTGC TCGACGCCAA CGGCTACTTC CACACCGGCG ACGCGGGCGT GCTCGACAGC 
GAGGGCCACC TGCGCATCAT CGACCGCGCC AAGGACGTGG GCCGGCTCGC GAGCGGCGCG 
ATCTTTGCGC CCAACTACAT CGAGAACAAG CTCAAGTTCT TCCCGCAGAT CAAGGAAGCC 
GTGTGCTTCG GCAACGCACG CGAGGAGGTC TGCGCGGCCA TCAACATCGA CTTCGAGGCG 
GTGGGCAACT GGGCCGAGCG CCGGGGGCTG GCCTATGGCG GCTACGTCGA CCTGGCCGGC 
AAGCCCGAGG TGCTGGCGCT CGTCGCCGAA TGCATCGCCA AGGTGAATGC CGACCTGGCG 
AGCGAAGACG GCATGGGCGA GACGCAGATC GCGCGCTTCC TGGTGCTGCA CAAGGAGCTC 
GACCCCGATG ACGACGAGCT CACGCGCACG CGCAAGGTGC GGCGCGGCTT CATCGCCGAG 
AAATACGCGG TGCTGGTCAG CGCGCTGTAC GGCGGCAAGA GCGAGCAGTT CATCGAGACC 
CAGGTCAAGT TCGAGGACGG ACGCACGGGG GTTGTCAGCG CCACGCTGAA GATCACCGAA 
GCCAAGACCT TCCCCATCGT GAAGGCCGCT GCATGA 

 

Protein sequence

MQTTAPTFPR LLLAHAQAQP QAPAIREKDL GIWQTWSWSA VAQEVREMAC GLASLGFKPF 
DNLSIVGANR PHLYMAVLAA QSLRGVPVPL YQDAVASEMV FMLQDAAIDF VIVEDQEQVD 
KLLECRELQK DQQHGIRHII YDDPKGLRHY DQPGLMSYEQ LRELGREFDK AHVGYYDRAV 
ASGEATDVGV ILYTSGTTGR PKGVCQTHAS FIAAGRGGVE TDRLGPGDNI MSYLPMAWVG 
DHLFSVAQWL VGGFTLNCPE SSETVMNDMR EIGPSYYFGP PRTFEGLLTA VSIRMEDAAA 
PKRWLYGKFM ALAQRVGADI LNGAPVGTGD RLMYGLGNLL VYGPLRNVLG MSRIRVAYTA 
GAAIGPDLFR FYRSIGVNLK QFYGQTETCA YVCLQQDGKV KLQTVGTAAP GIELKIAEDG 
EVLVRGVSVL KEYYKRPDAT AEVLDANGYF HTGDAGVLDS EGHLRIIDRA KDVGRLASGA 
IFAPNYIENK LKFFPQIKEA VCFGNAREEV CAAINIDFEA VGNWAERRGL AYGGYVDLAG 
KPEVLALVAE CIAKVNADLA SEDGMGETQI ARFLVLHKEL DPDDDELTRT RKVRRGFIAE 
KYAVLVSALY GGKSEQFIET QVKFEDGRTG VVSATLKITE AKTFPIVKAA A