Gene Vapar_4998 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4998 
Symbol 
ID7974280 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp5312647 
End bp5313228 
Gene Length582 bp 
Protein Length193 aa 
Translation table11 
GC content63% 
IMG OID644795592 
ProductSuperoxide dismutase 
Protein accessionYP_002946867 
Protein GI239817957 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0605] Superoxide dismutase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.664548 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACACA CCCTGCCGCC CCTGCCATAC GCCCTTGACG CGCTGGCACC CGAGTACTCG 
AAGGAAACCC TCGAGTACCA CTACGGCAAG CACCACAACG CCTACGTGGT GAACCTCAAC 
AACCTGCAAA AGGGCACCGA GTTCGAGTCG ATGCCTCTCG AGGACATCGT CAAGAAGTCC 
AGCGGTGGCA TCTACAACAA CGCCGCCCAG ATCTGGAACC ACACCTTCTT CTGGAGCTGC 
ATGAAGCCCC AGGGCGGCGG TGCTCCCACG GGCGCGCTGG CCAAGGCCAT CGATGCCAAG 
TGGGGCAACT ACGACGCCTT CAAGGAAGCC TTCGTGAAGT CGGCCGTGGG CAACTTCGGC 
TCGGGCTGGA CCTGGCTGGT GAAGAAGGCC GACGGCTCGC TGGACATCGT GAACATGGGC 
GCCGCGGGCA CGCCGCTGAC CACCGGCGAC ACCCCGGTGC TGACGGTGGA CGTCTGGGAG 
CACGCCTACT ACATCGACTA CCGCAACCTG CGCCCGAAGT TCGTCGAGAC CTTCCTCGCC 
AAGCTGGTGA ACTGGGACTT CGCGGCCAAG AACTTCGGCT GA
 
Protein sequence
MEHTLPPLPY ALDALAPEYS KETLEYHYGK HHNAYVVNLN NLQKGTEFES MPLEDIVKKS 
SGGIYNNAAQ IWNHTFFWSC MKPQGGGAPT GALAKAIDAK WGNYDAFKEA FVKSAVGNFG 
SGWTWLVKKA DGSLDIVNMG AAGTPLTTGD TPVLTVDVWE HAYYIDYRNL RPKFVETFLA 
KLVNWDFAAK NFG