| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4994 |
|---|
| Symbol | |
|---|
| ID | 7974276 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 5307703 |
|---|
| End bp | 5309799 |
|---|
| Gene Length | 2097 bp |
|---|
| Protein Length | 698 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644795588 |
|---|
| Product | K+-transporting ATPase, B subunit |
|---|
| Protein accession | YP_002946863 |
|---|
| Protein GI | 239817953 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2216] High-affinity K+ transport system, ATPase chain B |
|---|
| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01497] K+-transporting ATPase, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAACT CGAAGACATC TCTTTCGCTG CTCGACGCGG CACTGGTGAA GCCCGCGCTG
TGGGGCGCTT TCGCCAAGCT GGATCCGCGC ACGCAGTGGC GCAATCCGGT GATGTTCATC
GTCTACATCG GCAGCATCCT CACGACGCTG CTCTGGGTGC ATTCGCTGAG CTTCCCCGGC
GACACCGGCA TGAAGCCCGC CTTCGTGCTG GCCATCACCG TCTGGCTGTG GTTCACCGTG
CTGTTCGCGA ACTTCGCCGA GGCCCTGGCC GAGGGCCGCA GCAAGGCGCA GGCCGCTTCG
CTGCGCGGCC TGCGCAAGGA CACCTGGGCC AAGAAGCTGC AGGAGCCGCG CCATGGTGGC
CAGTGGCTTC CCGAGCAGGC GCCCAACCTG CGCCGGGGCG ACGTGGTGCT GGTGGAAACG
GGCGACGTGA TCCCGCTCGA CGGCGAAGTG ATCGAAGGCG TGGCCTCGGT CGACGAGAGC
GCCATCACCG GCGAATCGGC GCCCGTGGTG CGCGAGTCGG GCGGCGACTT CTCGGCCGTG
ACCGGCGGCA CGCGCGTGCT GTCCGACTGG CTGGTGGTCC GCATCTCGGT CAACCCGGGC
GAGTCGTTCC TCGACCGCAT GATCGGCATG GTCGAGGCGG CCAAGCGCCA CAAGACGCCC
AACGAGATCG CGCTCACCAT CCTCCTGGTG GCGCTGACGC TGGTGTTCCT GATGGTCACC
GTCACGCTGC TGCCGTTCTC GGTGTTCAGC GTGGAGGCCG CGGGCGCGGG CACCGTGGTG
TCGCTCACCG CGCTGGTGGC GCTCCTGGTG TGCCTGATCC CGACCACCAT CGGCGGCCTG
CTCTCGGCTG TCGGCGTGGC CGGCATGAGC CGCATGATGC AGGCCAACGT GATCGCGACC
TCGGGCCGCG CGGTGGAAGC CGCCGGCGAC GTCGACGTGC TGCTGCTCGA CAAGACCGGC
ACCATCACGC ACGGCAACCG CCAGGCGAGT GCCTTCCTGC CCGCACCCGG CGTGCCGAAG
GGCCGTCTCG CGCGGGCCGC CATGCTTGCG TCGCTGGCCG ACGAGACGCC CGAGGGCCGC
AGCATCGTCG AACTCGCTCG CCGCGATGGC CTGGAGGCCG CATCTGTCGA AGGCGCGCGT
TTCGTGCCCT TCACCGCGCA GACCCGCATG AGCGGCGTCG ACCTGCCGGC TGCACCGAAC
AGTCTCGATA CCGACGCGGT GCTGCTGCGC AAGGGCGCGG TCGATGCGAT CCGCCGGCAT
GTCGAATCGC TCGGCGGCAG CGTGCCGGCC GAGGTGCTGC GCGCGTCCGA GGAAACGGCG
CGCCGCGGCA GCACTCCGCT GGCCGTGGCC GAGGGCAGCC GCGTGCTCGG CGTGGTCGAG
CTCAAGGACA TCGTCAAGAC CGGCATCAAG GAGCGCTTTG CCGAGCTGCG CCGCATGGGC
ATCAAGACCG TGATGATCAC CGGCGACAAC AAGCTCACCG CCGCGGCCAT TGCGGCCGAG
GCCGGCGTGG ACGACTTCCT GGCCGAGGCC ACGCCCGAGG ACAAGCTCGC GCTGATCCGC
CAGTACCAGT CCGAAGGCCG CCTGGTCGCG ATGACCGGCG ACGGCACCAA CGACGCGCCG
GCCCTCGCGC AGGCCGACGT GGCGGTGGCC ATGGGCAGCG GCACGCAGGC CGCGAAGGAG
GCCGGCAACA TGGTCGACCT GGATTCGAAC CCGACCAAGC TGCTCGAGGT GGTGGAGACC
GGCAAGGCGC TGCTCATGAC GCGCGGCTCG CTCACCACCT TCTCGATTGC CAACGACGTG
GCGAAGTACT TCGCGATCAT TCCGGCGATC TTCGTCTCGA CCTATCCGCA GCTCGGCGCG
CTCAACGTGA TGCGGCTCGC GAGCCCGTCG TCGGCCATTC TGTCGGCGGT GGTCTTCAAC
GCGCTGGTCA TCGTGTTCTT GATTCCGCTC GCGCTCAAGG GCGTGCGCTA CCGGCCGGTG
GGCGCGGCCG CGCTGCTGCG CCGCAACCTG GCCATCTACG GCCTCGGCGG CCTGCTCGTT
CCCTTCATCG GCATCAAGCT GATCGACTGG CTGCTGGTCG CAGTCCATCT GGTCTGA
|
|---|
| Protein sequence | MTNSKTSLSL LDAALVKPAL WGAFAKLDPR TQWRNPVMFI VYIGSILTTL LWVHSLSFPG
DTGMKPAFVL AITVWLWFTV LFANFAEALA EGRSKAQAAS LRGLRKDTWA KKLQEPRHGG
QWLPEQAPNL RRGDVVLVET GDVIPLDGEV IEGVASVDES AITGESAPVV RESGGDFSAV
TGGTRVLSDW LVVRISVNPG ESFLDRMIGM VEAAKRHKTP NEIALTILLV ALTLVFLMVT
VTLLPFSVFS VEAAGAGTVV SLTALVALLV CLIPTTIGGL LSAVGVAGMS RMMQANVIAT
SGRAVEAAGD VDVLLLDKTG TITHGNRQAS AFLPAPGVPK GRLARAAMLA SLADETPEGR
SIVELARRDG LEAASVEGAR FVPFTAQTRM SGVDLPAAPN SLDTDAVLLR KGAVDAIRRH
VESLGGSVPA EVLRASEETA RRGSTPLAVA EGSRVLGVVE LKDIVKTGIK ERFAELRRMG
IKTVMITGDN KLTAAAIAAE AGVDDFLAEA TPEDKLALIR QYQSEGRLVA MTGDGTNDAP
ALAQADVAVA MGSGTQAAKE AGNMVDLDSN PTKLLEVVET GKALLMTRGS LTTFSIANDV
AKYFAIIPAI FVSTYPQLGA LNVMRLASPS SAILSAVVFN ALVIVFLIPL ALKGVRYRPV
GAAALLRRNL AIYGLGGLLV PFIGIKLIDW LLVAVHLV
|
|---|
| |