| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4951 |
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| Symbol | |
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| ID | 7974233 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5259114 |
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| End bp | 5259782 |
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| Gene Length | 669 bp |
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| Protein Length | 222 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644795546 |
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| Product | Tripartite ATP-independent periplasmic transporter DctQ component |
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| Protein accession | YP_002946821 |
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| Protein GI | 239817911 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4665] TRAP-type mannitol/chloroaromatic compound transport system, small permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.740211 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCATCC AACGCTTTCT CCACGCCGTC GACCGGTTCA GCATGGTCGT GGGCAAGACC
TTCTCGTGGC TCATCGTGGC GCTGATGCTG CTGGTGTGCG GCGAGGTCTT CAAGCGCTAT
GCGCTCAACG CGCCCACTGC CTGGATCTTC GATGCCAACA ACATGCTCTA CGGGACGCTC
TTCATGATGG GCGGCGCCTA CACGCTCTCG CAGGCCGGCC ACGTGCGCGG CGACTTCCTC
TACGGCAGCA TGAAGCCGCG CACGCAGGCC GCGCTCGACC TCGTGCTGTT CATCCTCTTC
TTCCTGCCCG GCGTGGTGGC GCTCACCTGG TCGGGCTGGA CCTACTTCGG CGAATCGCTC
GCCATGCGCG AGCAGACCTT CAATGCCGTC CCGATTCCGC TCTATCCCTT CAAGTTCGTG
ATTCCGGTGG CCGGCGCCGT GCTGCTGCTG CAGGGCATTG CGGAGATGGT GCGCTGCGCG
CTGTGCCTGA AGACCGGCGC GTGGGCGCCG CGCCTGAAGG ACGCGGAGGA AATGGACGTG
GTCGGCGAAC AGCTCGCCGG CAGCACCCTC GTCGACGAGG CCGACAAGCG CGAGGTGATC
GACAAGGCCA AGGCCATCGA GCAGGCCGCG CAGCAGCGCA AGAGCGGCAC GACGGGAGGC
ACCCAGTGA
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| Protein sequence | MTIQRFLHAV DRFSMVVGKT FSWLIVALML LVCGEVFKRY ALNAPTAWIF DANNMLYGTL
FMMGGAYTLS QAGHVRGDFL YGSMKPRTQA ALDLVLFILF FLPGVVALTW SGWTYFGESL
AMREQTFNAV PIPLYPFKFV IPVAGAVLLL QGIAEMVRCA LCLKTGAWAP RLKDAEEMDV
VGEQLAGSTL VDEADKREVI DKAKAIEQAA QQRKSGTTGG TQ
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