Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4935 |
Symbol | |
ID | 7974217 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 5241990 |
End bp | 5243159 |
Gene Length | 1170 bp |
Protein Length | 389 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644795530 |
Product | Extracellular ligand-binding receptor |
Protein accession | YP_002946805 |
Protein GI | 239817895 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.682713 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGAAGC TCAAGACAGT GACGACCCTG GCCGTGCTGG GCCTGGCCGC AGCGTTCGCG TCCGCGCAGC AGCAACAGGG CGTGAGCAAG GACGAGATCC GCATCGGCAC GATCCAGGAC CTGTCGGGCC CGCTCGCGGG CTTCGGCAAG CAGGCGCGCA ACGGCATGCA GCTGCGCGTG GACGAGCTCA ACGAGCAGGG CAGCATCAAC GGCCGCAAGC TCAAGCTCTT CGTCGAGGAC TCGGGCTACG ACCCGAAGAA GGCGGTGCTC GCGGCGCAGA AGCTGGTGAA CCAGGAGAAG ATCTTCATCA TGGCCGGCCA CATCGGCACG GCGCAGAACA TGGCGGCCAT GCCGGTGCAG TTCGAGAAGA ACATCGTCAA CTTCATGCCG ATCACCGCGG CGCGCGAGAT GTACGAGCCG CTGAACCGGC TCAAGTATTC GTTCGCCGCC ACCTACTACG ACCAGATCCG CCTGGCGCTG CCCAAGATGA TCAAGGAGAA GGGCGCCAAG AAGGTCTGCA CCATCTACCA GGACGACGAG TTCGGGCTCG AAGTGCAGCG CGGCGCCGAG GCGGGCCTGA AGGCCGCCGG CATGGAACTG GCCGAAAAAA CATCGTTCAA GCGCGGCGCC ACCGACTTCA GCTCGCAGGT CGCCAAGATG AAGGCCGCCA ACTGCGACCT CGTGGTGCTT GGCACCATCA TCCGCGAGAC CATCGGCACT GTGGGCGAGG CGCGCAAGAC CGGCTTCAAC CCGACCTTCC TGGGATCGAG CGCGTCCTAC ACCGACCTGA TCCACAAGCT CGGCGGCAAG GCGATGGACG GCATCTACGC CACCATGACG GTGCAGAACC CCTACACCGA CGAGCAGTCC CAGCCGCTGC GCTTCTGGGC CAACAAGTAC AAGACCAAGT TCAACGAAGA CCCGACGGTG TTCTCGGTGT ACGGCTACGT CATCATCGAT TCGTTCATCA AGGCGGCGCA GAAGGCCGGC CCGAACCTCA CGACCGACAG CTTCATCAAG GCCATGGACA GCATGGTCTT CGAGCCCGAC ATGTTCGGCA GCCCGAAGAG CAGCTACACC GCCACCAAGC GCCTGGGCAA CGACCAGTCG CGCCTGTCCC AGATCAAGGA CGGGAAATGG GTCGTGGTTT CCGACTATGT GACACCGTAA
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Protein sequence | MMKLKTVTTL AVLGLAAAFA SAQQQQGVSK DEIRIGTIQD LSGPLAGFGK QARNGMQLRV DELNEQGSIN GRKLKLFVED SGYDPKKAVL AAQKLVNQEK IFIMAGHIGT AQNMAAMPVQ FEKNIVNFMP ITAAREMYEP LNRLKYSFAA TYYDQIRLAL PKMIKEKGAK KVCTIYQDDE FGLEVQRGAE AGLKAAGMEL AEKTSFKRGA TDFSSQVAKM KAANCDLVVL GTIIRETIGT VGEARKTGFN PTFLGSSASY TDLIHKLGGK AMDGIYATMT VQNPYTDEQS QPLRFWANKY KTKFNEDPTV FSVYGYVIID SFIKAAQKAG PNLTTDSFIK AMDSMVFEPD MFGSPKSSYT ATKRLGNDQS RLSQIKDGKW VVVSDYVTP
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