| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4913 |
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| Symbol | rplC |
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| ID | 7971607 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5222108 |
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| End bp | 5222788 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644795508 |
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| Product | 50S ribosomal protein L3 |
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| Protein accession | YP_002946783 |
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| Protein GI | 239817873 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0087] Ribosomal protein L3 |
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| TIGRFAM ID | [TIGR03625] 50S ribosomal protein L3, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00251627 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTCTGA GCAACTCCCT CGGGTTGCTG GGCCGCAAGG TGGGGATGAT GCGTCTCTTC
ACCGATGACG GGGACGCAGT TCCTGTCACG GTGGTGGATG TGTCCAACAA CCGTGTGACC
CAGATCAAGT CGCAAGAGAC CGACGGCTAC GTCGCACTGC AAGTGACGTT CGGTTCGCGC
AAGGCATCGC GCGTGACCAA GCCCCAAGCC GGCCACCTCG CCAAGGCGGG TGTCGAAGCT
GGTGAAATCA TCCGCGAATT CCGCGTGACC GCCGATACCG CAGGCCAGCA CAAGGCTGGC
GCCGTGATCG CCGCGAGCAG CGTGTTCTCG GTGGGCCAGA AGGTCGACGT GCAAGGCACC
TCGATCGGCA AGGGCTACGC TGGCACGATC AAGCGCCACA ACATGAGCTC GCAGCGCGCG
TCGCACGGCA ACAGCCGTTC GCACAACGTT CCCGGCTCGA TCGGCATGGC ACAAGACCCC
GGTCGCGTGT TCCCCGGCAA GCGCATGACG GGCCACCTCG GCGACGTCAC CAAGACCACG
CAGAACCTCG ATGTCTTCCG CATCGACGAA GCGCGTCAAC TGTTGCTCAT CAAGGGCGCG
ATCCCGGGTT CGAAGGGTGG CTTCGTCACC GTGCGTCCCG CCATCAAGGC CAAGCCGCAA
GCGGCTGAAG GAGCGAAGTA A
|
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| Protein sequence | MSLSNSLGLL GRKVGMMRLF TDDGDAVPVT VVDVSNNRVT QIKSQETDGY VALQVTFGSR
KASRVTKPQA GHLAKAGVEA GEIIREFRVT ADTAGQHKAG AVIAASSVFS VGQKVDVQGT
SIGKGYAGTI KRHNMSSQRA SHGNSRSHNV PGSIGMAQDP GRVFPGKRMT GHLGDVTKTT
QNLDVFRIDE ARQLLLIKGA IPGSKGGFVT VRPAIKAKPQ AAEGAK
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