| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4912 |
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| Symbol | rplD |
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| ID | 7971606 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5221488 |
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| End bp | 5222108 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644795507 |
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| Product | 50S ribosomal protein L4 |
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| Protein accession | YP_002946782 |
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| Protein GI | 239817872 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0088] Ribosomal protein L4 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000142333 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAACTCG AACTCCTGAA CGAACAAGGC CAGGCCGCGT CGAAATACGA CGCCCCCGAG
ACCGTGTTCG GCCGTGACTA CAACGAAGAC CTGGTCCACC AGATCGTCGT TGCATTCCAG
GCCAACGCCC GCCAAGGCAC GCGCGCCCAG AAGGACCGCG AGCAGGTCAA GCACTCGACC
AAGAAGCCTT TCAAGCAAAA GGGAACGGGC CGCGCCCGTG CCGGTATGAC GTCCTCGCCG
CTGTGGCGCG GGGGTGGCCG GATCTTCCCG AACATGCCTG ACGAAAACTT CTCGCAGAAG
ATCAACAAGA AGATGTACCG CGCCGGCATG GCCGCCATCT TCTCGCAGCT CGCTCGCGAA
GGCCGTCTGG CCGTGGTGGA TTCGCTGACC GTGGATTCGC CCAAGACGAA GCCGCTGGCA
GCCCGTTTCA AGGCGATGAA TCTCGAGTCC GTGCTCGTGA TCGCCGAAGA AGTCGACGAA
AACCTGTACC TTGCCTCGCG CAATCTGGTG AACATTCTCG TGGTCGAACC CCGCTACGCC
GATCCGGTGT CGCTGGTCCA CTACAAGAAG GTGCTGGTCA CCAAGGGTGC CGTCGACAAG
CTCAAGGAGA TGTTCGCATG A
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| Protein sequence | MQLELLNEQG QAASKYDAPE TVFGRDYNED LVHQIVVAFQ ANARQGTRAQ KDREQVKHST
KKPFKQKGTG RARAGMTSSP LWRGGGRIFP NMPDENFSQK INKKMYRAGM AAIFSQLARE
GRLAVVDSLT VDSPKTKPLA ARFKAMNLES VLVIAEEVDE NLYLASRNLV NILVVEPRYA
DPVSLVHYKK VLVTKGAVDK LKEMFA
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