| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4910 |
|---|
| Symbol | rplB |
|---|
| ID | 7971604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 5220329 |
|---|
| End bp | 5221153 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644795505 |
|---|
| Product | 50S ribosomal protein L2 |
|---|
| Protein accession | YP_002946780 |
|---|
| Protein GI | 239817870 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0090] Ribosomal protein L2 |
|---|
| TIGRFAM ID | [TIGR01171] ribosomal protein L2, bacterial/organellar |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000776237 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGTCA TCAAGATGAA ACCCACTTCG CCGGGCCAAC GCGGCGCGGT GAAGATCTCG
CGGGACCACC TGTTCAAGGG TGCTCCTCAC GCGCCTCTGC TGGAGCCCCA GTTCCAGAAG
GCCGGCCGCA ACAACAACGG CCACATCACG ATCCGTCATC GTGGCGGCGG TGCCAAGCAC
CACTACCGCG TTGTCGACTT CGTGCGCAAC AAGGACGGCA TCCCGGCCAA GGTCGAACGC
ATCGAATACG ACCCGAACCG CACCGCCCAC ATTGCCCTGG TCTGCTACGC CGACGGCGAG
CGCCGCTACA TCATCGCCCC GCGCGGTCTT GAGGCTGGTG CAACGCTGCT GAGCGGTTCG
GAAGCCCCGA TCCGCGCCGG CAACACGCTG CCGATCCGCA ACATTCCGGT CGGCTCGACG
ATCCACTGCA TCGAACTGCA ACCCGGCAAG GGCGCGCAGA TCGCGCGTTC GGCCGGCACG
TCGGCCACGC TGCTGGCTCG CGAAGGCGTC TACGCCCAGG TCCGCATGCG TTCGGGTGAG
GTGCGCCGCA TCCACATCGA ATGCCGCGCC ACCATCGGTG AAGTCGCGAA CGAAGAGCAC
AGCCTGCGCC AACTCGGCAA GGCCGGTGTG AAGCGTCACA TGGGTATTCG CCCGACCGTT
CGCGGCGTGG TGATGAATCC TGTCGACCAC CCGCACGGTG GTGGCGAAGG CAAGACCGGC
GAAGGCCGCC ATCCTGTCGA CCCATGGGGC AACCTGACCA AGGGCTACCG TACCCGTAAC
AACAAGCGCA CGCAGGTCTT CATCGTGTCG CGCCGCAAGA AGTAA
|
|---|
| Protein sequence | MAVIKMKPTS PGQRGAVKIS RDHLFKGAPH APLLEPQFQK AGRNNNGHIT IRHRGGGAKH
HYRVVDFVRN KDGIPAKVER IEYDPNRTAH IALVCYADGE RRYIIAPRGL EAGATLLSGS
EAPIRAGNTL PIRNIPVGST IHCIELQPGK GAQIARSAGT SATLLAREGV YAQVRMRSGE
VRRIHIECRA TIGEVANEEH SLRQLGKAGV KRHMGIRPTV RGVVMNPVDH PHGGGEGKTG
EGRHPVDPWG NLTKGYRTRN NKRTQVFIVS RRKK
|
|---|
| |