Gene Vapar_4880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4880 
Symbol 
ID7971574 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp5197099 
End bp5197779 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content68% 
IMG OID644795475 
Productlipoate-protein ligase B 
Protein accessionYP_002946750 
Protein GI239817840 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0321] Lipoate-protein ligase B 
TIGRFAM ID[TIGR00214] lipoate-protein ligase B 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCACGG GCATCGAAGC GACATGGCTG GGCGCCGCCG ACTACGCCGC CACCTACGGC 
GCGATGAAGC AGTTCACGCT CGAACGCCTG CCCGAGACGC CCGATGCGCT GTGGATCTGC 
GAGCATGCGC CGGTCTTCAC GCAGGGGATC GCGGGCAGGC AGGACCACAT CCTGAACCCC 
GGCGCGATCC CGGTCGTGCA GACCGACCGC GGCGGCCAGG TCACCTTCCA CGGCCCGGGC 
CAGGTGGTGG CCTATCCGCT GATCGATCTT CGGCGCGCGG GCTACTTCGT GAAGGAATAC 
GTCTACCGCA TCGAGGAATC GGTGCTGCGC ACGCTGGCCC ACTTCGGCGT GACGGGCCAC 
CGCGTGGCGG GCGCACCCGG CATCTACGTG CGACTCGACG ATCCTTTTTC GCATGCCGCG 
CTGACCGGCC CGCTGCCCGC CGGCGACCCG TTCCGCGGCC TCGGCAAGAT CGCCGCGCTC 
GGCATCAAGG TGAGCCGCCA TGCCACCTAC CACGGCGTGG CGCTCAACGT CGCGATGGAC 
CTCGAACCCT TCTCGCGCAT CAACCCTTGC GGCTATGCGG GGCTGCAAAC GGTCGATCTT 
TCTACAATCG GGGTCCAAAC CACATGGGAA GAAGCTGCCC GGGTCCTGAG CCAGAAGCTC 
GGCACCTACC TGGCGCCTTA G
 
Protein sequence
MSTGIEATWL GAADYAATYG AMKQFTLERL PETPDALWIC EHAPVFTQGI AGRQDHILNP 
GAIPVVQTDR GGQVTFHGPG QVVAYPLIDL RRAGYFVKEY VYRIEESVLR TLAHFGVTGH 
RVAGAPGIYV RLDDPFSHAA LTGPLPAGDP FRGLGKIAAL GIKVSRHATY HGVALNVAMD 
LEPFSRINPC GYAGLQTVDL STIGVQTTWE EAARVLSQKL GTYLAP