Gene Vapar_4868 details

Gene Information

• Locus tag: Vapar_4868
• Symbol: atpC
• ID: 7971562
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 5188016
• End bp: 5188435
• Gene Length: 420 bp
• Protein Length: 139 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 644795463
• Product: F0F1 ATP synthase subunit epsilon
• Protein accession: YP_002946738
• Protein GI: 239817828
• COG category: [C] Energy production and conversion
• COG ID: [COG0355] F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)
• TIGRFAM ID: [TIGR01216] ATP synthase, F1 epsilon subunit (delta in mitochondria)

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAGGCA CCATTCATGT GGACGTGGTC AGCGCGGAAG AGTCGATCTT CTCGGGCGAA 
GCCAAGTTCG TCGCGCTGCC CGGTGAAGCC GGTGAGCTCG GCATCTACCC GCGCCACACG 
CCGCTGATCA CGCGCATCCG CCCCGGCGCC GTGCGCATCG AAACGGCCGA CGGCGGCGAG 
GAGTTCGTCT TCGTGGCCGG CGGCATTCTC GAAGTGCAGC CCAACGCCGT CACCGTGCTG 
TCCGACACCG CAATCCGCGG CAAGGACCTC GACGACGAGA AGGCCAACCA GGCCAAGGCA 
GCCGCCGAGG AAGCGCTCAA GAACGCCAAG AGCGACATCG ACATCGCCAT GGCGCAGTCG 
GAACTGGCCG TGATGGCTGC GCAGATCGCT GCGCTGCGCA AGTACCGCCA GAAGAAGTAA 

 

Protein sequence

MAGTIHVDVV SAEESIFSGE AKFVALPGEA GELGIYPRHT PLITRIRPGA VRIETADGGE 
EFVFVAGGIL EVQPNAVTVL SDTAIRGKDL DDEKANQAKA AAEEALKNAK SDIDIAMAQS 
ELAVMAAQIA ALRKYRQKK