Gene Vapar_4826 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4826 
Symbol 
ID7970296 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp5144068 
End bp5144700 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content67% 
IMG OID644795421 
ProductNAD(P)H dehydrogenase (quinone) 
Protein accessionYP_002946697 
Protein GI239817787 
COG category[I] Lipid transport and metabolism 
COG ID[COG1182] Acyl carrier protein phosphodiesterase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.294925 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGAAC TGCTCTACAT CGAGACCTCG CCCAGGAAGA CGCGCTCCGC CAGCATCGAG 
GTGGCCGGCG CCTTCATCAA TGAAGTGACG CGCATCCACC CGGCCTGCCA TGTCACCACG 
CTGAACCCCT GGACCATGCA GCTGCCGGAG CTGTCGCAGG ACATGCTCGA TGCCAAGTAC 
GCCGGCATCA ACGGCGTGCC GCTGAGCGAC GCCCAGCAAG TGGCCTGGGA CGAGGTCCGG 
CGCATTGCCG TGCCTTTCCA CGCCGCGGAC CACATCGTGC TGGCGATGCC GCTGTGGAAC 
TTTGGCATTC CCTACAAGCT GAAGCACCTG ATCGACGTGG TGTCGCACAA GGACGTGCTG 
TTCCGCTTCG ACGCCTCGGG CCTGTCGGGC ATGCTGCAGA CCCGGCGCGC GACGGTGGTG 
TGCGCAAGGG GCCTGGACTA CCCCCTGGGC AAGGACGGCT CCGCGCATGC GCTCGACTTC 
CAGCTGCCCT ACATCGAGAC CTGGCTGCGC TTCATCGGCG TGCGCGAGGT GCGCTCCGTG 
GTGGTCGAGA AAACGCTGAT GGGGCCGGAG GTCGATGCCG GCGCCAGGGC CGAGGCCAGG 
CGCCGCGCGG TGGAGCTTGC CGAGGGGCTC TGA
 
Protein sequence
MKELLYIETS PRKTRSASIE VAGAFINEVT RIHPACHVTT LNPWTMQLPE LSQDMLDAKY 
AGINGVPLSD AQQVAWDEVR RIAVPFHAAD HIVLAMPLWN FGIPYKLKHL IDVVSHKDVL 
FRFDASGLSG MLQTRRATVV CARGLDYPLG KDGSAHALDF QLPYIETWLR FIGVREVRSV 
VVEKTLMGPE VDAGARAEAR RRAVELAEGL