| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4811 |
|---|
| Symbol | |
|---|
| ID | 7970281 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 5130824 |
|---|
| End bp | 5131297 |
|---|
| Gene Length | 474 bp |
|---|
| Protein Length | 157 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644795406 |
|---|
| Product | transcriptional regulator, AsnC family |
|---|
| Protein accession | YP_002946682 |
|---|
| Protein GI | 239817772 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1522] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGACC TGGATCTGGA TCGCATCGAC CTTCGGCTGC TGAAGATTCT TCAGGAGGAC
GGCCGCATCA CCAACCTCAA GCTGGCCGAG TTGGTGGCGC TCTCGCCCAC CGCCGTGCTG
GCGCGGGTGC AGCGGCTCAC GCGCGAGGGT TTCATCCAGG GCTACGAGGC GCGGCTCGAT
CCGCACAAGC TCGGGCGCGG GCTCACGGTG TTCGTCGAGA TCCTGCTCGA CCGCACCACG
TCCAACGTGT TCGAGCAGTT CAAGGCCGCG GTGCAGGTGC GCGACGAGAT CATGGAATGC
CACATGGTCG CGGGCGGCTT CGACTACCTG CTCAAGACCC GCATGGCCGA CATGGCGGCC
TACCGCGAAT TCGCGGGCAC GGTGCTGTGG CAACTGCCGG GCGTGCGGGA GACGCGGACC
TACGCGGTGA TGGAAGAAAT CAAGAGCAGC GCGCGGCTGC CGCTGGCCGT CTAG
|
|---|
| Protein sequence | MLDLDLDRID LRLLKILQED GRITNLKLAE LVALSPTAVL ARVQRLTREG FIQGYEARLD
PHKLGRGLTV FVEILLDRTT SNVFEQFKAA VQVRDEIMEC HMVAGGFDYL LKTRMADMAA
YREFAGTVLW QLPGVRETRT YAVMEEIKSS ARLPLAV
|
|---|
| |